BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZE08FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig695 1292 0.0
>3x_Contig695
Length = 2059
Score = 1292 bits (652), Expect = 0.0
Identities = 652/652 (100%)
Strand = Plus / Minus
Query: 85 ttcttgagataaacttaggtagacctaacacattagcagcagctaaagcggaagcctcca 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttcttgagataaacttaggtagacctaacacattagcagcagctaaagcggaagcctcca 605
Query: 145 aggcaagaccacgggatgcttggtaaccagctcccccaatcccgtagttatggatcacct 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aggcaagaccacgggatgcttggtaaccagctcccccaatcccgtagttatggatcacct 545
Query: 205 tgagtttcccttgattttttggtaaatcgaactcagagtattcaactctgacaccatctt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgagtttcccttgattttttggtaaatcgaactcagagtattcaactctgacaccatctt 485
Query: 265 ttcttcctggtctcaatgccacataagagttatagatggttggatttttcaactctggtg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ttcttcctggtctcaatgccacataagagttatagatggttggatttttcaactctggtg 425
Query: 325 tatggcgtttacaaacttcaacgattttctttgtcaattcatcgtcaacggtatttgacc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tatggcgtttacaaacttcaacgattttctttgtcaattcatcgtcaacggtatttgacc 365
Query: 385 aatcgtttttcctcataataccaccgataatacaaccaccgtcaccacgagggaacatgt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aatcgtttttcctcataataccaccgataatacaaccaccgtcaccacgagggaacatgt 305
Query: 445 tcaagaattgatcgcttgcaggattatcatcctttggcaacggttccacaacaatttgga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tcaagaattgatcgcttgcaggattatcatcctttggcaacggttccacaacaatttgga 245
Query: 505 aaggtaaatcctcataaatctgaacgatttgacccttcactgggtacaccttttcaacct 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aaggtaaatcctcataaatctgaacgatttgacccttcactgggtacaccttttcaacct 185
Query: 565 ctgagggttcataatgcctcaagaattgacctgcatgaacacccgtagcattgattacca 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ctgagggttcataatgcctcaagaattgacctgcatgaacacccgtagcattgattacca 125
Query: 625 aatctggcacaaatccaacgatttcaggaatattctcaatggcatcaatctttgccagtt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aatctggcacaaatccaacgatttcaggaatattctcaatggcatcaatctttgccagtt 65
Query: 685 gtctgagtttaccacccattttcttaatctcattgaccatccagaacttata 736
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gtctgagtttaccacccattttcttaatctcattgaccatccagaacttata 13
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6428
Number of Sequences: 1807
Number of extensions: 6428
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)