BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZE08RM1.SCF screened BAC_end
(886 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1760 650 0.0
3x_Contig1708 486 e-137
>3x_Contig1760
Length = 27266
Score = 650 bits (328), Expect = 0.0
Identities = 342/344 (99%), Gaps = 2/344 (0%)
Strand = Plus / Plus
Query: 45 cttccccttcc-tagcaaatgctggggttcccacgctcttgcaatgctt-cgcggtacga 102
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 26923 cttccccttccatagcaaatgctggggttcccacgctcttgcaatgctttcgcggtacga 26982
Query: 103 tattatacaaaacacaactctgtatcactcgttgatgcgttgtcagcacattctccggaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26983 tattatacaaaacacaactctgtatcactcgttgatgcgttgtcagcacattctccggaa 27042
Query: 163 ctgtcatccgaaaacgtatcggctatatcacttctgttctcttcaaaatattacctagga 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27043 ctgtcatccgaaaacgtatcggctatatcacttctgttctcttcaaaatattacctagga 27102
Query: 223 aattcaactcgttcacctgttaaatcacctaccgggaattaccttcttgaccaaaaaaag 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27103 aattcaactcgttcacctgttaaatcacctaccgggaattaccttcttgaccaaaaaaag 27162
Query: 283 aatgtactaatggacaaactgcactgtttacaactcacttcatgctatcgataacaactc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27163 aatgtactaatggacaaactgcactgtttacaactcacttcatgctatcgataacaactc 27222
Query: 343 atctcatctcatcgataaagagattgcatgtcgacgcagcaact 386
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27223 atctcatctcatcgataaagagattgcatgtcgacgcagcaact 27266
>3x_Contig1708
Length = 19451
Score = 486 bits (245), Expect = e-137
Identities = 330/349 (94%), Gaps = 7/349 (2%)
Strand = Plus / Plus
Query: 348 atctcatcgataaagagattgcatgtcgacgcagcaactgataaagaaatttttaaagtc 407
|||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||
Sbjct: 1 atctcatcgataaagagattgcatttgtaggcagcaactgataaataaatttttaaagtc 60
Query: 408 acgtgacaagtatcaacagtttctgaaaaaatctgaaaatctcaattacaaaagggtttc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 61 acgtgacaagtatcaacagtttctgaaaaaatctgaaaatctcaattacaaaa-ggtttc 119
Query: 468 taatcgcaagcaattctcttgttattcggttcaacctgcatttaaactcgaattataccg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 taatcgcaagcaattctcttgttattcggttcaacctgcatttaaactcgaattataccg 179
Query: 528 tctattgcctgattctctgactaagcgaaagcag-ttattatgtctaaggtttatgacca 586
||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| |
Sbjct: 180 tctattgcctgattctctgactaagcg-aagcagtttattatgtctaagttttatgacga 238
Query: 587 tgatgacgctgtgg-ttatgaccaccatgtacctgatttcca-gacgaggat-aatttga 643
|||||||||||||| ||||||| || |||||||||||||||| ||||||||| |||||||
Sbjct: 239 tgatgacgctgtggattatgacgacgatgtacctgatttccaggacgaggatgaatttga 298
Query: 644 cga-tatttaaacgatgaagaatttgaattgttgaaccattggtttccc 691
||| ||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct: 299 cgattatttaaacgatgaagaatttgaattgatgaaccagttgtttccc 347
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7485
Number of Sequences: 1807
Number of extensions: 7485
Number of successful extensions: 308
Number of sequences better than 1.0e-20: 2
length of query: 886
length of database: 10,358,551
effective HSP length: 16
effective length of query: 870
effective length of database: 10,329,639
effective search space: 8986785930
effective search space used: 8986785930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)