BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZE09FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1561 1445 0.0
>3x_Contig1561
Length = 10959
Score = 1445 bits (729), Expect = 0.0
Identities = 805/820 (98%), Gaps = 8/820 (0%)
Strand = Plus / Plus
Query: 87 tagaacgttgtaaaatattcaaatcaactttaaccttctcgtcatcgagagattccaaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tagaacgttgtaaaatattcaaatcaactttaaccttctcgtcatcgagagattccaaaa 584
Query: 147 ggggcaaagtcctgtataaatcagcatttttggagttaagcctacagcggtaaaattctt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ggggcaaagtcctgtataaatcagcatttttggagttaagcctacagcggtaaaattctt 644
Query: 207 tagccactgcctcatgtttctcaacaaactttgagcccgaagctgaagatctctccaatt 266
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tagccactgcctcaagtttctcaacaaactttgagcccgaagctgaagatctctccaatt 704
Query: 267 cttgattaagcctgtcatgtgtcaatgaggtgtttggcttgacacgagtctcgcctatcc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cttgattaagcctgtcatgtgtcaatgaggtgtttggcttgacacgagtctcgcctatcc 764
Query: 327 acgttgtaacaatatcaaagttttcaggcttcagttcatatattatactgacagtgtttg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 acgttgtaacaatatcaaagttttcaggcttcagttcatatattatactgacagtgtttg 824
Query: 387 acagtttctcgggctgcaaacttaagaattcattcagagcggctggaagcaaaccaacag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 acagtttctcgggctgcaaacttaagaattcattcagagcggctggaagcaaaccaacag 884
Query: 447 tcttctgtggcatgaagacagcgctagatcttttcctagctcttctatccaaagatgaac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 tcttctgtggcatgaagacagcgctagatcttttcctagctcttctatccaaagatgaac 944
Query: 507 cttcttcaatatggactgttacatcaacaacatgaaatcctaattcaaggttaccgttgt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 cttcttcaatatggactgttacatcaacaacatgaaatcctaattcaaggttaccgttgt 1004
Query: 567 cagtgtctcttaaatggaccgcataatcagaaacttcaccagtttctgaaatggcaatga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 cagtgtctcttaaatggaccgcataatcagaaacttcaccagtttctgaaatggcaatga 1064
Query: 627 cattttcataagtacgccttgttttgctttgctcttctgaaagcaatacaggtgcaaaac 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 cattttcataagtacgccttgttttgctttgctcttctgaaagcaatacaggtgcaaaac 1124
Query: 687 tatctctctcctttgtacggtccttgaggtcttaatattcatcacttaagaaa-tattgt 745
|||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 1125 tatctctctcctttgtacggtcctgagggtctaaatattcatcacttaagaaattattgt 1184
Query: 746 ctctcaaaa-tgaatcaatctcagttntttggatcgttcacatcgcctaattgcgaaaca 804
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 1185 ctctcaaaattgaatcaatctcagtt-tttggatcgttcacatcgcctaattgcgagaca 1243
Query: 805 aga-taccaaa-ggatgcanagaagtgattggccagcgcttgaatgctagcaacg-aaac 861
||| ||||||| ||||||| |||||||||||||||||||||| |||||||||||| ||||
Sbjct: 1244 agagtaccaaagggatgcaaagaagtgattggccagcgcttg-atgctagcaacgaaaac 1302
Query: 862 tttattcagatacttatcagcattttcgnacgaagtcctt 901
|||||||||||||||||||||||||||| |||||||||||
Sbjct: 1303 tttattcagatacttatcagcattttcg-acgaagtcctt 1341
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6090
Number of Sequences: 1807
Number of extensions: 6090
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)