BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZE09RM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig918 1217 0.0
>3x_Contig918
Length = 2482
Score = 1217 bits (614), Expect = 0.0
Identities = 629/634 (99%)
Strand = Plus / Plus
Query: 51 agtacggcgcatacttcgatgtacatacctgctggtttgactccgccggtcttattggct 110
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1838 agtacggccaatacttcgatgtacatacctgctggtttgactccgccggtcttattggct 1897
Query: 111 attaatctggattttacagcaccaatcgcaatttccccgtaatatgctagctgtgcatag 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1898 attaatctggattttacagcaccaatcgcaatttccccgtaatatgctagctgtgcatag 1957
Query: 171 aatactcctttcgcattcttgtccacaacttcctcgaagtattcacctggatactgaacc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1958 aatactcctttcgcattcttgtccacaacttcctcgaagtattcacctggatactgaacc 2017
Query: 231 ggtagcacaacatcaatgatctttctgaatgttcctaaattgttagcgtaaacgttatca 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2018 ggtagcacaacatcaatgatctttctgaatgttcctaaattgttagcgtaaacgttatca 2077
Query: 291 atcgtaaccaatgctctacccatcttctcaattgtctatatatggataccttacctgctg 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2078 atcgtaaccaatgctctacccatcttctcaattgtctatatatggataccttacctgctg 2137
Query: 351 attctcaacgtacagaaagtactggtttctagcagtaattcttgtcattgtatctctctt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2138 attctcaacgtacagaaagtactggtttctagcagtaattcttgtcattgtatctctctt 2197
Query: 411 gaagatattatttcttcggattataagttctatggaattttcaaatcaactgtgtatctc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2198 gaagatattatttcttcggattataagttctatggaattttcaaatcaactgtgtatctc 2257
Query: 471 aggatcgaaacagcgaacaatgttaaaatcgagagtgtaataccagataccagccttaga 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2258 aggatcgaaacagcgaacaatgttaaaatcgagagtgtaataccagataccagccttaga 2317
Query: 531 tacactgttagaatttcctctaaactgccaaaacaacgaaaccaatctaacatcgatgct 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2318 tacactgttagaatttcctctaaactgccaaaacaacgaaaccaatctaacatcgatgct 2377
Query: 591 caaatgcataaactatcataaacggacattccattacacttattttcaactagcaaaggg 650
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 2378 caaatgcataaactatcataaacggacattccataccacttatttccaactagcaaaggg 2437
Query: 651 aaatgtgtcttggaatatggcattggatcccgct 684
||||||||||||||||||||||||||||||||||
Sbjct: 2438 aaatgtgtcttggaatatggcattggatcccgct 2471
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5450
Number of Sequences: 1807
Number of extensions: 5450
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)