BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZE10RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1759 942 0.0
>3x_Contig1759
Length = 25622
Score = 942 bits (475), Expect = 0.0
Identities = 566/586 (96%), Gaps = 9/586 (1%)
Strand = Plus / Minus
Query: 42 aagcgttaagtaaggcacagcagcgtgagctaagaaaatcaaatcctggatttactgtcg 101
|||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 6777 aagctttaagtaaggcagaacagcgtgagctaagaaaatcaaatcctggatttactgtcg 6718
Query: 102 aaaagagagtatagaaaggatcataccagacaatataacaaacaaagcaatgtaccagaa 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6717 aaaagagagtatagaaaggatcataccagacaatataacaaacaaagcaatgtaccagaa 6658
Query: 162 acatttaacagagaagaaactgggctcacaatgaacatcttctgttttacataaagaaaa 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6657 acatttaacagagaagaaactgggctcacaatgaacatcttctgttttacataaagaaaa 6598
Query: 222 ggatattaggattttcatgtatatagagatcaaagaaatattaatcttattctaatgagg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6597 ggatattaggattttcatgtatatagagatcaaagaaatattaatcttattctaatgagg 6538
Query: 282 tatttgagagtatcatataccaaacgtctttatttagaagacaccggtgacttctctggt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6537 tatttgagagtatcatataccaaacgtctttatttagaagacaccggtgacttctctggt 6478
Query: 342 gagaatattcctaggctgtttcacgtattcgtcgtcaccatcttcaccatattcatcatc 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6477 gagaatattcctaggctgtttcacgtattcgtcgtcaccatcttcaccatattcatcatc 6418
Query: 402 gtcaaatgccaccgagaacgaatctacaattctgaagatatcatttttattcatagcttt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6417 gtcaaatgccaccgagaacgaatctacaattctgaagatatcatttttattcatagcttt 6358
Query: 462 tccatcaaaacttagttctatactgtcatttgccgaatagaaattgaattttcttgagcc 521
||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct: 6357 tccatcaaaacttagttctatactgtcatttgccgaaaag-aattg-attttcttgagcc 6300
Query: 522 agcaattgatcaactcttattgtacaaatgtttttgctttaaggcctttgtgggtaaccc 581
|||||||||||||||| ||||||||||||||||| ||| ||| |||||| ||||| ||
Sbjct: 6299 agcaattgatcaactc-tattgtacaaatgtttt--gttttaggtctttgt-ggtaa-cc 6245
Query: 582 tttgaacacttcattttcggggagaatttttttgctcaaaacagct 627
||||||||| |||| ||| ||||| || | ||||||||||||||||
Sbjct: 6244 tttgaacac-tcatattctgggag-atatatttgctcaaaacagct 6201
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8763
Number of Sequences: 1807
Number of extensions: 8763
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)