BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZE11FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1735 1441 0.0
>3x_Contig1735
Length = 19486
Score = 1441 bits (727), Expect = 0.0
Identities = 798/816 (97%), Gaps = 5/816 (0%)
Strand = Plus / Plus
Query: 84 caagaagtaccaaacgttgacattaggaatgtccttgaaagagttaatcctatggaaatc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4470 caagaagtaccaaacgttgacattaggaatgtccttgaaagagttaatcctatggaaatc 4529
Query: 144 attccatttcctgggtgaaaaatcttcttcagagatgtctatatcattattgaaatgagt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4530 attccatttcctgggtgaaaaatcttcttcagagatgtctatatcattattgaaatgagt 4589
Query: 204 cgctcgttcattattttcttttatttttggatcccaccaatactcgtccaactcatggtt 263
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4590 cgctcgttcaagattttcttttatttttggatcccaccaatactcgtccaactcatggtt 4649
Query: 264 attttcatcgtctgaattatcgtagagggtgtcttgatcactagtcaaaaagcgttccca 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4650 attttcatcgtctgaattatcgtagagggtgtcttgatcactagtcaaaaagcgttccca 4709
Query: 324 cacaagttcaggaactaagggaaatacattcgtgaaggggatattaactattgtcaaatg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4710 cacaagttcaggaactaagggaaatacattcgtgaaggggatattaactattgtcaaatg 4769
Query: 384 tactcctgagtttggaatccgttcccacaatcttttgaaatgatggaaataagaatggaa 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4770 tactcctgagtttggaatccgttcccacaatcttttgaaatgatggaaataagaatggaa 4829
Query: 444 aggagatatcgatgaggatccaaagtaatgtgcttgttctgttgttaaaagtgctggttt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4830 aggagatatcgatgaggatccaaagtaatgtgcttgttctgttgttaaaagtgctggttt 4889
Query: 504 ccgtggtgtgctagcttcggtgtttattaacttcccattgctcattacaacaaccactgg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4890 ccgtggtgtgctagcttcggtgtttattaacttcccattgctcattacaacaaccactgg 4949
Query: 564 tgtagttggcggtggtgctgttagttttacacctttctgagggtctatcagtgtcttgag 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4950 tgtagttggcggtggtgctgttagttttacacctttctgagggtctatcagtgtcttgag 5009
Query: 624 atcatccatatcgtcctgcataggttcttctggaaaataatatgactcatcagtaggttt 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5010 atcatccatatcgtcctgcataggttcttctggaaaataatatgactcatcagtaggttt 5069
Query: 684 gacattgacaaagcatgtactattacagtctatggttaggtgcgtgagagaaccaaagc- 742
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5070 gacattgacaaagcatgtactattacagtctatggttaggtgcgtgagagaaccaaagca 5129
Query: 743 atttatcanaaggagatcatatttactttgaagatcaaacaatgataactttctgacac- 801
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5130 atttatcaaaaggagatcatatttactttgaagatcaaacaatgataactttctgacacg 5189
Query: 802 gnaaaagaacgagtaccaatatctcataagtccatta-cagctttgatgacccagta-tt 859
| |||||||||||||| | ||||||||||||||||| ||||||||||||| ||| | ||
Sbjct: 5190 gaaaaagaacgagtacaataatctcataagtccattaccagctttgatgacacaggattt 5249
Query: 860 gagattccatgtttgaactgnaagat-tagatccaa 894
||| | | |||||||||||| ||||| |||||||||
Sbjct: 5250 gagttccaatgtttgaactggaagatgtagatccaa 5285
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6757
Number of Sequences: 1807
Number of extensions: 6757
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)