BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZE11RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1735 1237 0.0
>3x_Contig1735
Length = 19486
Score = 1237 bits (624), Expect = 0.0
Identities = 728/756 (96%), Gaps = 5/756 (0%)
Strand = Plus / Minus
Query: 52 ttgagtttgaaggaccgataggaacatacgtattggagcc-gggtttggaaggcta-gat 109
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 9818 ttgagtttgaaggaccgataggaacatacgtattggagccagggtttggaaggctaagat 9759
Query: 110 cat-atcggaatcaccatcaaagtttataccagatactccagttaatcctgctgctcctt 168
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9758 catcatcggaatcaccatcaaagtttataccagatactccagttaatcctgctgctcctt 9699
Query: 169 cgcgggaacctgagcccgtaactcctagtgaattcgagtacgatcccaagtttggaccct 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9698 cgcgggaacctgagcccgtaactcctagtgaattcgagtacgatcccaagtttggaccct 9639
Query: 229 gcatgggattacgcgcagctgcagccggtgcagccggcccaggattatgagaaacgtagt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9638 gcatgggattacgcgcagctgcagccggtgcagccggcccaggattatgagaaacgtagt 9579
Query: 289 catgttgctgtctatgatcatacaacttagtatgctcttcagttttcaatgacgccaaag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9578 catgttgctgtctatgatcatacaacttagtatgctcttcagttttcaatgacgccaaag 9519
Query: 349 aatgtgctgctgaagtagtacgagaaatctcgtgttctccggaatcaactgatttatcat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9518 aatgtgctgctgaagtagtacgagaaatctcgtgttctccggaatcaactgatttatcat 9459
Query: 409 cagacatctctgattatttcgacgcttgccctgttaggcttaacagtataataaataaaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9458 cagacatctctgattatttcgacgcttgccctgttaggcttaacagtataataaataaaa 9399
Query: 469 aacgtattcgtagtgggaacgttgaacttttcaatcgtgtaaccttgagtcttatcgttt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9398 aacgtattcgtagtgggaacgttgaacttttcaatcgtgtaaccttgagtcttatcgttt 9339
Query: 529 tagcttacaaatagacaggctaggttatactatcactatagtgagaaacgatttaagttg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 9338 tagcttacaaatagacaggctaggttatactatcactatagtgagaaacgatttaggttg 9279
Query: 589 aaactgccaaatgcttaacataacgggccttttgaagcagctaagttcgtcacaactaaa 648
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 9278 aaactgccaaatgcttaacaaaacgggccttttgaggcagctaagttcgtcacaactaaa 9219
Query: 649 acagcaaagaaaggtgacagcttaatcttgactatcacacacttcatatgggtaaatgtt 708
||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 9218 acagcaaagaagggtgacagctaaatcttgactatcacacacttcatatggttaaatgtt 9159
Query: 709 tggagaaattatgtattccttttaaacgcaaattttttcggggaatgcctttctaagaag 768
|| || ||||||||||| ||| | ||||| || | ||| | |||||| ||||||||| |
Sbjct: 9158 tgaag-aattatgtatttcttct-aacgccaaactattccgtgaatgcgtttctaagatg 9101
Query: 769 gtaaaaaagtactttttttttaaccaacctttccat 804
||||| | ||||| || ||| ||||||||||||||
Sbjct: 9100 gtaaagatgtactcttctttacaccaacctttccat 9065
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7779
Number of Sequences: 1807
Number of extensions: 7779
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)