BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZE12FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1526 0.0
>3x_Contig1718
Length = 19496
Score = 1526 bits (770), Expect = 0.0
Identities = 815/828 (98%), Gaps = 2/828 (0%)
Strand = Plus / Plus
Query: 85 atatatgtttcgatgttttgtagatcagatattttgagcacgcatgtgtataaacaggtt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13713 atatatgtttcgatgttttgtagatcagatattttgagcacgcatgtgtataaacaggtt 13772
Query: 145 atcatatccacaaacttcttcatatttggatatttggcctcatcgataccctcaattgga 204
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 13773 atcatatccacaaacttcttcataattggatatttggcctcatcgataccctcaattgga 13832
Query: 205 tcgaaaagtaattgngaatatacagtgtccattaaacccatactgtcaaatacacgattc 264
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13833 tcgaaaagcaattgtgaatatacagtgtccattaaacccatactgtcaaatacacgattc 13892
Query: 265 acaatcatgttgtaatgatctgtgttactgtatggacgggtgaggagaatatggatagaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13893 acaatcatgttgtaatgatctgtgttactgtatggacgggtgaggagaatatggatagaa 13952
Query: 325 tctagtgcaatagattgggctttgggtatgtcctttgttaagcaccctaacaatgcagag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13953 tctagtgcaatagattgggctttgggtatgtcctttgttaagcaccctaacaatgcagag 14012
Query: 385 aatacgtcattggatacaataacttcgctcaaaggccagttcaagcagctctttaaagtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14013 aatacgtcattggatacaataacttcgctcaaaggccagttcaagcagctctttaaagtt 14072
Query: 445 tccaacaacctaacgatgtactgggcattttccacttctaatgctgcttttaattcactg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14073 tccaacaacctaacgatgtactgggcattttccacttctaatgctgcttttaattcactg 14132
Query: 505 gtgaaaagagcaaaccaaccttctggattggatttgaacatctcccatttaccagagtac 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14133 gtgaaaagagcaaaccaaccttctggattggatttgaacatctcccatttaccagagtac 14192
Query: 565 ttgtatttcacactgaagacatccattgggcagacaatcattatgcagagcggttgaata 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14193 ttgtatttcacactgaagacatccattgggcagacaatcattatgcagagcggttgaata 14252
Query: 625 atgggcaatctcttcaacacggcaacatcttcaagtaagaacgtgtcttcgaaaagcgtt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14253 atgggcaatctcttcaacacggcaacatcttcaagtaagaacgtgtcttcgaaaagcgtt 14312
Query: 685 ctaaagattatgagaactagctctctagacgcctcattcatctgccatagttctgttagg 744
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 14313 ctaaagattatgagaactagctctctagacgcttcattcatctgccatagttctgttagg 14372
Query: 745 catctatccatatcgacccacgattcggctagctgttcctcagtaggttcttccactttt 804
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14373 catctatccatatcgacccacgattcggctagctgttcctcagtaggttcttccactttc 14432
Query: 805 caagcctcagcccagatccttggcgctatttcgacccaaaggaaa-ctagcttctctcta 863
|||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 14433 aaagcctcaccccagatccttttcgctatttcgacccaaaggaaagctagcttctctcta 14492
Query: 864 at-tatnctggatcattcggttgcaccctgtagtttagttcaatgatc 910
|| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 14493 atatatcttggatcattcggttgcaccctgtagtttagttcaatgatc 14540
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5308
Number of Sequences: 1807
Number of extensions: 5308
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)