BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZE12RM1.SCF screened BAC_end
         (930 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1739                                                        1275   0.0  

>3x_Contig1739 
          Length = 22061

 Score = 1275 bits (643), Expect = 0.0
 Identities = 715/730 (97%), Gaps = 7/730 (0%)
 Strand = Plus / Plus

                                                                         
Query: 53    aaagttgcgaagctccatagaagagaagtttgtaataatcatagaatctctcattacctc 112
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10332 aaagttgcgaagctccatagaagagaagtttgtaataatcatagaatctctcattacctc 10391

                                                                         
Query: 113   ttgagctggatttgttctgtttcattaattcacttttctcaaatgctagcatgtacatgg 172
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10392 ttgagctggatttgttctgtttcattaattcacttttctcaaatgctagcatgtacatgg 10451

                                                                         
Query: 173   gcaaagttttcaaagaatctggtaagattaattgccccccagaagaaccgccacacagtg 232
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10452 gcaaagttttcaaagaatctggtaagattaattgccccccagaagaaccgccacacagtg 10511

                                                                         
Query: 233   ctctgtattgtgtaaagatttcaatgatcttgcggtcaatgttcttcctaatttcattga 292
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10512 ctctgtattgtgtaaagatttcaatgatcttgcggtcaatgttcttcctaatttcattga 10571

                                                                         
Query: 293   aattacagtcttccaatgtggctagcacatctttgatcattatgctactcaccacatctt 352
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10572 aattacagtcttccaatgtggctagcacatctttgatcattatgctactcaccacatctt 10631

                                                                         
Query: 353   ggtttataaacttgaagacttcgattacgttcgagttgacagctgcattagtattaattg 412
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10632 ggtttataaacttgaagacttcgattacgttcgagttgacagctgcattagtattaattg 10691

                                                                         
Query: 413   cacgtactttacgtacaccatcgatatcagtatacaatagagctgcttggaagcatatat 472
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10692 cacgtactttacgtacaccatcgatatcagtatacaatagagctgcttggaagcatatat 10751

                                                                         
Query: 473   cttctccgacctttagagtgtcatcgtacttgaatagcacgtcgaacttttgatctctgg 532
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10752 cttctccgacctttagagtgtcatcgtacttgaatagcacgtcgaacttttgatctctgg 10811

                                                                         
Query: 533   tgagtacagggattacagggtcctcatcagtattctttacactctccgaataatagttgt 592
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10812 tgagtacagggattacagggtcctcatcagtattctttacactctccgaataatagttgt 10871

                                                                         
Query: 593   naactgacagtccggatgaacatcgcacttttagcataccttgatacccgactgtgcatt 652
              ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 10872 aaactgacagtccggaggaacaacgcacttttagcataccttgatacccgactgtgcatt 10931

                                                                         
Query: 653   tcacacttccttaaatgtcattaacaaattttgaattcattccttattgatgtttgaaat 712
             ||||||| ||| |||||||||||||||| |||||||||| |||||||||||| |||||||
Sbjct: 10932 tcacactccctaaaatgtcattaacaaa-tttgaattca-tccttattgatg-ttgaaat 10988

                                                                         
Query: 713   tcgaattagtggtgtagattgcccagagttggccattacagggtaaggatgttatttgca 772
             ||||| |||||||||||| ||||||||| | || |||||||||||| ||||||| |||||
Sbjct: 10989 tcgaa-tagtggtgtaga-tgcccagaggttgcaattacagggtaa-gatgtta-ttgca 11044

                       
Query: 773   agatcgatat 782
             ||||||||||
Sbjct: 11045 agatcgatat 11054


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7370
Number of Sequences: 1807
Number of extensions: 7370
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)