BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZF01RM1.SCF screened BAC_end
(1035 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1573 995 0.0
>3x_Contig1573
Length = 10819
Score = 995 bits (502), Expect = 0.0
Identities = 544/554 (98%), Gaps = 3/554 (0%)
Strand = Plus / Minus
Query: 42 caagctttcgatttgagcttatacttttattgttgagagattctttc-taaaaggtcttt 100
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 6664 caagctttcgatttgagcttatacttttattgttgagagattctttcatcaaaggtcttt 6605
Query: 101 agaaaaggttctagagagaaatagatacaaagagaattttctcaatctaatacagtttga 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6604 agaaaaggttctagagagaaatagatacaaagagaattttctcaatctaatacagtttga 6545
Query: 161 acgttgaacaaagggctcttcactgctatttgacacataattgacagcgtatttagaccc 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6544 acgttgaacaaagggctcttcactgctatttgacacataattgacagcgtatttagaccc 6485
Query: 221 aatactattgcagtttttatttgaggcactactgatttttttttcctttaagttaattcg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6484 aatactattgcagtttttatttgaggcactactgatttttttttcctttaagttaattcg 6425
Query: 281 agatgagttatgccagtggtcaacagcaggctgcgcaagttccaaatgcaggttttgatg 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6424 agatgagttatgccagtggtcaacagcaggctgcgcaagttccaaatgcaggttttgatg 6365
Query: 341 aacaaatgatgagaagagcagctgctgatagctatttcttgtcatcttcgtttggaagcg 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6364 aacaaatgatgagaagagcagctgctgatagctatttcttgtcatcttcgtttggaagcg 6305
Query: 401 tggatagggaaatggagtttctacattatcaaacgaacgggattcgtgtgaaagaggaat 460
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6304 tggatggggaaatggagtttctacattatcaaacgaacgggattcgtgtgaaagaggaat 6245
Query: 461 cgaagggtcctcaaattcctgttgcgaatggtacttccatcaacaacgttccatattacg 520
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 6244 cgaagggtcctcaaattcctgttgcgaatggtactaccatcaacaacgttccatattacg 6185
Query: 521 catctccagttgtaatgcaagatacaggttatacgacaaccgggtcatttccagcatttt 580
||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 6184 catctccagttgtcatgcaagatacaggttatacgac-accgggtca-ttccagcatttc 6127
Query: 581 tttcgaggggaacc 594
|| ||||||||||
Sbjct: 6126 ttcggaggggaacc 6113
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,643
Number of Sequences: 1807
Number of extensions: 14643
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 1035
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1019
effective length of database: 10,329,639
effective search space: 10525902141
effective search space used: 10525902141
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)