BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC8ZF02FM1.SCF screened BAC_end (932 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig220 839 0.0 >3x_Contig220 Length = 1055 Score = 839 bits (423), Expect = 0.0 Identities = 447/451 (99%), Gaps = 3/451 (0%) Strand = Plus / Minus Query: 88 tataataaacagtctgattatcataagagaaggttccttaggaatttggatgaagaagtg 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 457 tataataaacagtctgattatcataagagaaggttccttaggaatttggatgaagaagtg 398 Query: 148 gatgaagagcaagtgaaagatgtgaaaagaaggaaaaccgataaggatggtgataaggaa 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 397 gatgaagagcaagtgaaagatgtgaaaagaaggaaaaccgataaggatggtgataaggaa 338 Query: 208 gaggaaagtggcggtggatatacgatgcccaagacttcgcagcatattataactgagctc 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 337 gaggaaagtggcggtggatatacgatgcccaagacttcgcagcatattataactgagctc 278 Query: 268 tcggaagagatggttactgaagttccaggggtacgtaatcttcagttctttaagccttca 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 277 tcggaagagatggttactgaagttccaggggtacgtaatcttcagttctttaagccttca 218 Query: 328 gacagacaacatttcgcaattttgtttgatgaaaggtctccagaagatatgactgaagag 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 217 gacagacaacatttcgcaattttgtttgatgaaaggtctccagaagatatgactgaagag 158 Query: 388 gaaaggaaacagaaacaggttttaaaattggtacttaaggtgaaaaatgggttaccaagc 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 157 gaaaggaaacagaaacaggttttaaaattggtacttaaggtgaaaaatgggttaccaagc 98 Query: 448 tctaggaaaatagctctcagagcactcactcaaaaggcacc-ctcttt-cggggcaccat 505 ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct: 97 tctaggaaaatagctctcagagcactcactcaaaaggcacctctctttgcggggcaccat 38 Query: 506 tgtt-atttgattcgatcttgcccattcttc 535 |||| ||||||||| |||||||||||||||| Sbjct: 37 tgttgatttgattctatcttgcccattcttc 7 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6503 Number of Sequences: 1807 Number of extensions: 6503 Number of successful extensions: 44 Number of sequences better than 1.0e-20: 1 length of query: 932 length of database: 10,358,551 effective HSP length: 16 effective length of query: 916 effective length of database: 10,329,639 effective search space: 9461949324 effective search space used: 9461949324 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)