BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZF02RM1.SCF screened BAC_end
         (963 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1770                                                         827   0.0  

>3x_Contig1770 
          Length = 29267

 Score =  827 bits (417), Expect = 0.0
 Identities = 447/453 (98%), Gaps = 3/453 (0%)
 Strand = Plus / Minus

                                                                         
Query: 50    acatcgttcgattcctattaactccagattatcatcggtgaggaattatatctcaatcgg 109
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19119 acatcgttcgattcctattaactccagattatcatcggtgaggaattatatctcaatcgg 19060

                                                                         
Query: 110   atgtgctaataaaacgggcagcaggcttcttcgttccgcaggggtatcaagtcagtacaa 169
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19059 atgtgctaataaaacgggcagcaggcttcttcgttccgcaggggtatcaagtcagtacaa 19000

                                                                         
Query: 170   agatttcaggaggtttaacagttccagtaatggtaatggtaccgacaagaatgcttctgt 229
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18999 agatttcaggaggtttaacagttccagtaatggtaatggtaccgacaagaatgcttctgt 18940

                                                                         
Query: 230   tgcaccgaaaactgaggtcaagaagattgttcccccaaaaccatcaactaatggtaaatc 289
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18939 tgcaccgaaaactgaggtcaagaagattgttcccccaaaaccatcaactaatggtaaatc 18880

                                                                         
Query: 290   aaagactccgaccatttcggaattgcgtattatgaaagatctatttaagtatatctggcc 349
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18879 aaagactccgaccatttcggaattgcgtattatgaaagatctatttaagtatatctggcc 18820

                                                                         
Query: 350   cagcggtgataacaaggtcaaaattagagtgttaattgcattggcgctattgataagtgc 409
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 18819 cagcggtgataacaaggtcaaaattagagtgttaattgcattggcgctattgataggtgc 18760

                                                                         
Query: 410   caagttgttgaatgttcaagttccttttttcttcaaacagaccatcgatttcgatgaata 469
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 18759 caagttgttgaatgttcaagttccttttttcttcaaacagaccatcga-ttcgatgaata 18701

                                              
Query: 470   tttgattgggttccagatgtggcttactgtgct 502
              |||| |||| |||||||||||| |||||||||
Sbjct: 18700 -ttgaatggggtccagatgtggc-tactgtgct 18670


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9193
Number of Sequences: 1807
Number of extensions: 9193
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)