BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZF03FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1560 983 0.0
3x_Contig1800 498 e-140
>3x_Contig1560
Length = 9209
Score = 983 bits (496), Expect = 0.0
Identities = 526/535 (98%), Gaps = 1/535 (0%)
Strand = Plus / Minus
Query: 372 aaatataataaatatataatcaaggcagtatctctccgaacatcacaaacacaaaccctt 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3037 aaatataataaatatataatcaaggcagtatctctccgaacatcacaaacacaaaccctt 2978
Query: 432 ctaggtcaaagttattgatgattgatggatcttgagattggactgcacagagggaatcga 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2977 ctaggtcaaagttattgatgattgatggatcttgagattggactgcacagagggaatcga 2918
Query: 492 ctatctttaaccacactggagagtgaagttcacggattgttatgatccacaatggtacta 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2917 ctatctttaaccacactggagagtgaagttcacggattgttatgatccacaatggtacta 2858
Query: 552 gcacattgaggtactcttttacaaatttctctagttcttcatttttattttgatatgatt 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2857 gcacattgaggtactcttttacaaatttctctagttcttcatttttattttgatatgatt 2798
Query: 612 tacactcaagtattccccatccttttaatatactatgttttacttcttgttgtcatcaac 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2797 tacactcaagtattccccatccttttaatatactatgttttacttcttgttgtcatcaac 2738
Query: 672 caaaaatgtcttttctttttttggaataactttattttcgaaactgactttttactttaa 731
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2737 caaaaatgtcttttctttttttggattaactttattttcgaaactgactttttactttaa 2678
Query: 732 gaaaaatgtcagttttccgcactgaacttgcttgggcgcatacaaaaccaaatgaaaatg 791
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2677 gaaaattgtcagttttccgcactgaacttgcttgggcgcatacaaaaccaaatgaaaatg 2618
Query: 792 aactcttctgtaggcgaagaaaacgcttttatatatatnacaacacaccgaattgaattc 851
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 2617 aactcttctgtaggcgaagaaaacgctttaatatatatacaaacacaccgaattgaattc 2558
Query: 852 gtttgtttctttttcttgtagatacaacgaaatgtttgggggaataactaagtac 906
||||||||| |||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 2557 gtttgtttc-ttttcttgtagatacaacgagatgtttggggaaataactaagtac 2504
Score = 456 bits (230), Expect = e-128
Identities = 247/250 (98%), Gaps = 2/250 (0%)
Strand = Plus / Minus
Query: 88 atgtcagtttttattatgattggcattatttttgtttttcgaaaattgacaacaggtaaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3321 atgtcagtttttattatgattggcattatttttgtttttcgaaaattgacaacaggtaaa 3262
Query: 148 gacgcgaaccatattttcagaa-gccaaatcgcgaacagaattcaagaatacacgttaat 206
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3261 gacgcgaaccatattttcagaacgccaaatcgcgaacagaattcaagaatacacgttaat 3202
Query: 207 ggaacaaagcatgtaccacaaaattgaaacctcaaaaaaaagtccattgtaacacgaaag 266
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3201 ggaacaaagcaagtaccacaaaattgaaacctcaaaaaaaagtccattgtaacacgaaag 3142
Query: 267 acagacatatcaagaactcgtacggtatgagcatttgctgtaatcaagtccttttatttt 326
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3141 acagacatatcaagaactcgtacggtatgagcatttgctgtaatcaag-ccttttatttt 3083
Query: 327 tgatcaaaaa 336
||||||||||
Sbjct: 3082 tgatcaaaaa 3073
>3x_Contig1800
Length = 38778
Score = 498 bits (251), Expect = e-140
Identities = 251/251 (100%)
Strand = Plus / Minus
Query: 333 aaaataaatattttaaatataaataaaatataataaataaaatataataaatatataatc 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37968 aaaataaatattttaaatataaataaaatataataaataaaatataataaatatataatc 37909
Query: 393 aaggcagtatctctccgaacatcacaaacacaaacccttctaggtcaaagttattgatga 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37908 aaggcagtatctctccgaacatcacaaacacaaacccttctaggtcaaagttattgatga 37849
Query: 453 ttgatggatcttgagattggactgcacagagggaatcgactatctttaaccacactggag 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37848 ttgatggatcttgagattggactgcacagagggaatcgactatctttaaccacactggag 37789
Query: 513 agtgaagttcacggattgttatgatccacaatggtactagcacattgaggtactctttta 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37788 agtgaagttcacggattgttatgatccacaatggtactagcacattgaggtactctttta 37729
Query: 573 caaatttctct 583
|||||||||||
Sbjct: 37728 caaatttctct 37718
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,085
Number of Sequences: 1807
Number of extensions: 10085
Number of successful extensions: 101
Number of sequences better than 1.0e-20: 2
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)