BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZF03RM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1778 1227 0.0
>3x_Contig1778
Length = 27694
Score = 1227 bits (619), Expect = 0.0
Identities = 741/775 (95%), Gaps = 5/775 (0%)
Strand = Plus / Plus
Query: 38 gaagcttct-ccgaaaacgggatatctgctc-accatctgctgaaactgatggtaagaaa 95
||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 1743 gaagcttcttccgaaaacggtatatctgctccaccatctgctgaaactgatggtaagaaa 1802
Query: 96 gttgaaagccagcaacgccgctttactcctaactctaagccattttacccaagaaacgca 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1803 gttgaaagccagcaacgccgctttactcctaactctaagccattttacccaagaaacgca 1862
Query: 156 aatcaccacaacaaccatggtcatgggtaccaccaccagcataacaaaaataaccataat 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1863 aatcaccacaacaaccatggtcatgggtaccaccaccagcataacaaaaataaccataat 1922
Query: 216 aatgagaatcattaccatggttcaaagtatcaacgtcaacgttcgtacgctcctgtaatg 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1923 aatgagaatcattaccatggttcaaagtatcaacgtcaacgttcgtacgctcctgtaatg 1982
Query: 276 taccaacagaattataccccatcgtacgtcttggttaatgagattgtccgtcaaatccaa 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1983 taccaacagaattataccccatcgtacgtcttggttaatgagattgtccgtcaaatccaa 2042
Query: 336 tattatttcagcatacagaacttgagcaaagatatgttcttaaaatcgcaaatgaatgct 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2043 tattatttcagcatacagaacttgagcaaagatatgttcttaaaatcgcaaatgaatgct 2102
Query: 396 caaggttacgttccattggcattgatctcaagattccatcgtatgctaaacttatcttac 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2103 caaggttacgttccattggcattgatctcaagattccatcgtatgctaaacttatcttac 2162
Query: 456 ggcgatgtcggattgattctagctgcattacgagaattgaaaaactctgaaaactccaat 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2163 ggcgatgtcggattgattctagctgcattacgagaattgaaaaactctgaaaactccaat 2222
Query: 516 gtcaacattgctaaattgactgaacctttcgaaaatgtcgttgggaatcctttgttccag 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2223 gtcaacattgctaaattgactgaacctttcgaaaatgtcgttgggaatcctttgttccag 2282
Query: 576 tatgcattaagttctaaagtttggactgctgaccaatccatttttgaaaccaaatcttac 635
||||||||||||||||||||||||||||||||| ||||||||| |||| | |||||||||
Sbjct: 2283 tatgcattaagttctaaagtttggactgctgacgaatccatttctgaaccaaaatcttac 2342
Query: 636 gacaacggtgaaattcgtcagcgatgaattaaaactatttaaaattgaaacaatcaaccc 695
|||| || || |||||||||||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 2343 gacaccgttg-aattcgtcagcgatgaattagagctatttaaaattgaaccaatcaaccc 2401
Query: 696 aataatagattcattaaccttctttaaaacaaacttattta-tggaaaacacgagccaaa 754
|||||||||||||||| | | ||| ||| |||||| || || || ||||||||||| |||
Sbjct: 2402 aataatagattcattaccatccttcaaaccaaactcatctactgaaaaacacgagcaaaa 2461
Query: 755 ccaggattcagattcacaagaatctttcgaaattc-agaaaattcaaaccaagaa 808
||| ||| |||| ||||||||||| |||| || ||||||| ||||||||||
Sbjct: 2462 ccaagatcaagatcaacaagaatcttcagaaaatcaagaaaatcaaaaccaagaa 2516
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,773
Number of Sequences: 1807
Number of extensions: 10773
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)