BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZF04RM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1612 1164 0.0
>3x_Contig1612
Length = 15608
Score = 1164 bits (587), Expect = 0.0
Identities = 625/634 (98%), Gaps = 4/634 (0%)
Strand = Plus / Minus
Query: 50 gagaaaaggaatccatgcgatggtaacgacgtatttaaaacattgtctgataattggcaa 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15068 gagaaaaggaatccatgcgatggtaacgacgtatttaaaacattgtctgataattggcaa 15009
Query: 110 tttatcattgagtccttgtccaaattgatagatcatattaagatacaggcaagagaacag 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15008 tttatcattgagtccttgtccaaattgatagatcatattaagatacaggcaagagaacag 14949
Query: 170 ttaaacagaagacagactgattttgcgcaaatcatgggagggacctacctcagagaaaat 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14948 ttaaacagaagacagactgattttgcgcaaatcatgggagggacctacctcagagaaaat 14889
Query: 230 aaacaaaaacttcccgttagtttagctgatatcgttaacgatcagttaatctttctaaga 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14888 aaacaaaaacttcccgttagtttagctgatatcgttaacgatcagttaatctttctaaga 14829
Query: 290 attcacaaatggaatacgttcatattaacaagattaaaggcagttcaagtagagacagtg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14828 attcacaaatggaatacgttcatattaacaagattaaaggcagttcaagtagagacagtg 14769
Query: 350 gattcggatggtcctaaaggtgcagtcaagccttaaatcttttatagacagtacataaaa 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14768 gattcggatggtcctaaaggtgcagtcaagccttaaatcttttatagacagtacataaaa 14709
Query: 410 aaattcttctttccataacttaaacttgtagattgcagaactgatataatacttgcgagt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14708 aaattcttctttccataacttaaacttgtagattgcagaactgatataatacttgcgagt 14649
Query: 470 tagtactgctcaatgtgcacttggttgtcttaaatgttgtaattgttgtatatacacata 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14648 tagtactgctcaatgtgcacttggttgtcttaaatgttgtaattgttgtatatacacata 14589
Query: 530 aatgtatgtattgggaatgctactgatattttcctagcaccgtagcgggtaataaaaggt 589
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 14588 aatgtatgtattgggaatgctactgatattttcctagcaccgtagcggtaaataaaaggt 14529
Query: 590 attggcggctttaacgtttagcttaacttcgacatcagtgattttatttttggaaagcag 649
||||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 14528 attggcggcttaaacgtttagcttaacttcgacatcagtgatatca-ttttggaaagcag 14470
Query: 650 ccaacgctttgtttgacatttcgttggcaacgaa 683
||||||| |||||||||| ||||||||||||||
Sbjct: 14469 ccaacgc-ttgtttgaca--tcgttggcaacgaa 14439
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8052
Number of Sequences: 1807
Number of extensions: 8052
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)