BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZF05RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1133 1074 0.0
>3x_Contig1133
Length = 4723
Score = 1074 bits (542), Expect = 0.0
Identities = 592/602 (98%), Gaps = 5/602 (0%)
Strand = Plus / Minus
Query: 49 ttatttgaggacatgtgctttacctttgaagtaaagtatgtgcttgatgctagtgttcct 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 ttatttgaggacatgtgctttacctttgaagtaaagtatgtgcttgatgctagtgttcct 1084
Query: 109 tttatcagatccacagatattataccactggctgtattaccaccagcacatagtacttga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 tttatcagatccacagatattataccactggctgtattaccaccagcacatagtacttga 1024
Query: 169 ttttggttattggtatagtaacacatggtcttcatatcggaaagttgtgcgatatccgct 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 ttttggttattggtatagtaacacatggtcttcatatcggaaagttgtgcgatatccgct 964
Query: 229 gaagttaagctcatctgagtgacaccccttctattagagaaatgtaaagaatcggagctt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 gaagttaagctcatctgagtgacaccccttctattagagaaatgtaaagaatcggagctt 904
Query: 289 agtgatagaataccatttttattgcttaaaaggtcaacaacaggcattgagcctatatgt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 agtgatagaataccatttttattgcttaaaaggtcaacaacaggcattgagcctatatgt 844
Query: 349 gccgtatgtctggtataaagtgaatatgtcggatcatatgatgatacgcgtccgtaggaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 gccgtatgtctggtataaagtgaatatgtcggatcatatgatgatacgcgtccgtaggaa 784
Query: 409 tctccggcccatattagattagcctcagtatcaaatactacctttgttacttgcttttcc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tctccggcccatattagattagcctcagtatcaaatactacctttgttacttgcttttcc 724
Query: 469 tttttatcatactgcaaatagggcttctttaaatgatacgtcagatcttctggtgactga 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tttttatcatactgcaaatagggcttctttaaatgatacgtcagatcttctggtgactga 664
Query: 529 taggaaagttgccaattgttcatcactggttactatagttcaagtatttagttattcccc 588
|||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct: 663 taggaaagttgccaattgttcatcactggttactatagttcagttatttag-taatcccc 605
Query: 589 tttcatacatttcaaaagagcaacggttaagttttcttgtaccctaaccaaatcacagat 648
||||||||| |||||||||||||||| |||| | ||| ||||||||| ||||||||||||
Sbjct: 604 tttcataca-ttcaaaagagcaacgg-taag-tatctcgtaccctaa-caaatcacagat 549
Query: 649 gc 650
||
Sbjct: 548 gc 547
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6832
Number of Sequences: 1807
Number of extensions: 6832
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)