BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZF06RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1527 1205 0.0
>3x_Contig1527
Length = 8131
Score = 1205 bits (608), Expect = 0.0
Identities = 701/728 (96%), Gaps = 3/728 (0%)
Strand = Plus / Plus
Query: 46 tgaaatgtgttccggatgaac-catctcttagcatagaaattgttccaaatcgtcctttt 104
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 6161 tgaaatgtgttccggataaacacatctcttagcatagaaattgttccaaatcgtcctttt 6220
Query: 105 tcgatcctaatacttttctctattctacagaggcctttaattaagctttcacttcttgag 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6221 tcgatcctaatacttttctctattctacagaggcctttaattaagctttcacttcttgag 6280
Query: 165 tcacactttaactactaatatttcttagagttgtttttcttcctgattccttaccctttt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6281 tcacactttaactactaatatttcttagagttgtttttcttcctgattccttaccctttt 6340
Query: 225 tcaagggttctagcatcagtgtagatattcagctcatttccttcactttttctcttttgg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6341 tcaagggttctagcatcagtgtagatattcagctcatttccttcactttttctcttttgg 6400
Query: 285 tgtttaatgtcgctagggtatcttttataaatatgtccccacttgtacgcacctacgtgt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6401 tgtttaatgtcgctagggtatcttttataaatatgtccccacttgtacgcacctacgtgt 6460
Query: 345 atgtaactaatttttgatatgtttttagattttccggtgtttatgaaactgaaaaaaccg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6461 atgtaactaatttttgatatgtttttagattttccggtgtttatgaaactgaaaaaaccg 6520
Query: 405 cttcgagtaagagttaatgttattgttaagacgtgggtcacaacctatacgtactggcct 464
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6521 cttcgagtaagagttaatgttattgttaagacgtgggtcacaacctaaacgtactggcct 6580
Query: 465 atcatagacatactataggtacaccgctctattaccatcttctaacaatcatataccgaa 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6581 atcatagacatactataggtacaccgctctattaccatcttctaacaatcatataccgaa 6640
Query: 525 gtgtctgtgatgggtacaggtccatatccctctgcagaagagctgaatgctccactcatc 584
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 6641 gtgtctgtgatgggtacaggtccatatccttctgcagaagagctgaatgctccactcatc 6700
Query: 585 tgtgatgatgagggagcacaagcttatgaaatgagagatttgttacccgccccagatacg 644
||||||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||
Sbjct: 6701 tgtgatgatgaggaagcacaagcttatgaaatgagagatatgttaccggcccaggatacg 6760
Query: 645 accaggcatctcaccggaactggcgatgacatacgggaatttaagatttagtgatatttg 704
||||| ||||||||| |||||||||||||||||||||| ||||||| |||||||| | |
Sbjct: 6761 accagcaatctcaccgaaactggcgatgacatacgggaa-ttaagatatagtgataatag 6819
Query: 705 acccatctgggaaaaaatttgtggcgggccaattaacccaaaagatgaaacttccaaatt 764
||| |||||||| || ||||| |||||||||| |||||| | |||| ||| |||||| |
Sbjct: 6820 accaatctgggagaagatttggtgcgggccaataaacccagaggatg-aacctccaaaat 6878
Query: 765 tccatcta 772
||||||||
Sbjct: 6879 tccatcta 6886
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7994
Number of Sequences: 1807
Number of extensions: 7994
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)