BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZF07RM1.SCF screened BAC_end
(1095 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1587 527 e-149
>3x_Contig1587
Length = 10277
Score = 527 bits (266), Expect = e-149
Identities = 321/330 (97%), Gaps = 7/330 (2%)
Strand = Plus / Plus
Query: 48 tctttgttctcttttaacttgatcc-tttcttctactattct-actatggcttccacatc 105
||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 3345 tctttgttctcttttcacttgatccatttcttctactattctcactatggcttccacatc 3404
Query: 106 gccaatttccattaaaacattttctggttttatgtcagtgtgaattacaccacacttcct 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3405 gccaatttccattaaaacattttctggttttatgtcagtgtgaattacaccacacttcct 3464
Query: 166 atgcatataatcaagacctaacaatagctgctttgctatttgcttgacataaactatcgg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3465 atgcatataatcaagacctaacaatagctgctttgctatttgcttgacataaactatcgg 3524
Query: 226 tatgcccttgtgctcatattttttgattaatgctaacaagttctcacctaaaacttcgaa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3525 tatgcccttgtgctcatattttttgattaatgctaacaagttctcacctaaaacttcgaa 3584
Query: 286 aaccataacgacctggttcgccattaacacttggaatggatgaaatttatccaataacct 345
|||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 3585 aaccataacgacgt-gttcgccattaacac-tggaatggatgaaa-ttatccaataacct 3641
Query: 346 caagatatgcgcccgatccctttatgttca 375
||||||||||| ||||| ||||||||||||
Sbjct: 3642 caagatatgcg-ccgat-cctttatgttca 3669
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,576
Number of Sequences: 1807
Number of extensions: 30576
Number of successful extensions: 330
Number of sequences better than 1.0e-20: 1
length of query: 1095
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1079
effective length of database: 10,329,639
effective search space: 11145680481
effective search space used: 11145680481
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)