BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZF08RM1.SCF screened BAC_end
         (901 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1590                                                         954   0.0  

>3x_Contig1590 
          Length = 13653

 Score =  954 bits (481), Expect = 0.0
 Identities = 615/647 (95%), Gaps = 12/647 (1%)
 Strand = Plus / Plus

                                                                         
Query: 47    cattggtaacggcgccatttgatttcgatttcttctggaatccgaatcgtattttcgtca 106
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12401 cattggtaacggc-ccatttgatttcgatttcttctggaatccgaatcgtattttcgtca 12459

                                                                         
Query: 107   ttgatgttgacgatatccaagttaaagtggccggtgccttgcaaatttttcaccgtttgc 166
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12460 ttgatgttgacgatatccaagttaaagtggccggtgccttgcaaatttttcaccgtttgc 12519

                                                                         
Query: 167   tctctaatcaaaagcatattgataatcgattcccaatctccctcacgatctgcttcatca 226
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 12520 tctctaatcaaaagcatattgataatcgattcccaatctccctcacgatctgcttcagca 12579

                                                                         
Query: 227   acgctttgttttggcactagactagtgaataaataatcatcgagcaattgatcaacttta 286
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12580 acgctttgttttggcactagactagtgaataaataatcatcgagcaattgatcaacttta 12639

                                                                         
Query: 287   tcgattaaactcttgaaatccttaccaaatttgtacttggtcaaagtcttttcgaaacca 346
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12640 tcgattaaactcttgaaatccttaccaaatttgtacttggtcaaagtcttttcgaaacca 12699

                                                                         
Query: 347   ctagatgttggtttggttccataaacctttaacaaatgtggtgtttcgatgaatttaaca 406
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12700 ctagatgttggtttggttccataaacctttaacaaatgtggtgtttcgatgaatttaaca 12759

                                                                         
Query: 407   gtgaaccaattgaacatcgtccatgtagtggctaaccagagattccaatttgaaaaattg 466
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12760 gtgaaccaattgaacatcgtccatgtagtggctaaccagagattccaatttgaaaaattg 12819

                                                                         
Query: 467   ttaattaagacggtcccccatatacctggcacaccaaacacacgctcaggattattcaag 526
             |||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||
Sbjct: 12820 ttaattaagacggtcccccagatacctgcaacaccaaacacacgctcaggattattcaag 12879

                                                                         
Query: 527   tatctataaata-catccgtcttcaattt-cttttgtcaa-taaaataggtaggaag-aa 582
             |||||||||||| ||||  |||||||||| |||||||||| |||| ||||||||||| ||
Sbjct: 12880 tatctataaataccatcgttcttcaatttccttttgtcaattaaattaggtaggaagaaa 12939

                                                                         
Query: 583   tcaccct-taaccagcccaat--ttttatactttgg-agatctcatggttg-accaaatt 637
             ||||| |  |||||||| |||  ||| ||||| ||| ||||||||  |||| ||||||||
Sbjct: 12940 tcaccataaaaccagccaaattctttaatactatggaagatctcagtgttgcaccaaatt 12999

                                                            
Query: 638   ggattaccca--cacaacaacccaaagtttattgtattggaactacc 682
              || || |||   |||||||||||||| ||||||||||| |||||||
Sbjct: 13000 tgaatagccaacaacaacaacccaaaggttattgtattgtaactacc 13046


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8110
Number of Sequences: 1807
Number of extensions: 8110
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)