BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZF09FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1498 1578 0.0
>3x_Contig1498
Length = 12634
Score = 1578 bits (796), Expect = 0.0
Identities = 832/839 (99%), Gaps = 4/839 (0%)
Strand = Plus / Minus
Query: 88 taacaagaaactttccagattgcacatacccgatgagaagagaaacatatgtttgcaagt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3318 taacaagaaactttccagattgcacatacccgatgagaagagaaacatatgtttgcaagt 3259
Query: 148 ttaaatttggtacttgtatgagacggactagtatcatctaccaggtcataaatatttggg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3258 ttaaatttggtacttgtatgagacggactagtatcatctaccaggtcataaatatttggg 3199
Query: 208 ataggataatatgttcagaactgctataaggaataccttctcaaaaagatacaactcctc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3198 ataggataatatgttcagaactgctataaggaataccttctcaaaaagatacaactcctc 3139
Query: 268 gtttagattcaaaagatgggcagaattgacgacggctgagaaacagaaattcgttacaga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3138 gtttagattcaaaagatgggcagaattgacgacggctgagaaacagaaattcgttacaga 3079
Query: 328 ctttgttgagaactataaaaaacagtaccctggatccaagaccaatgtttcattgagggg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3078 ctttgttgagaactataaaaaacagtaccctggatccaagaccaatgtttcattgagggg 3019
Query: 388 actcgcgatggatatggagagatataatgatgccccttctgtttttggtatcttttataa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3018 actcgcgatggatatggagagatataatgatgccccttctgtttttggtatcttttataa 2959
Query: 448 cgatatttgggaaatcacaaaggcaagaaaagaatctttgtatggtgggaaacagattga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2958 cgatatttgggaaatcacaaaggcaagaaaagaatctttgtatggtgggaaacagattga 2899
Query: 508 taggagaaacttgattaaagattatggtagatttggacatgaaacatttcacgaactctt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2898 taggagaaacttgattaaagattatggtagatttggacatgaaacatttcacgaactctt 2839
Query: 568 gatcgattgatgtgcttgtcgttgattatatttatctattcttcgttataagcaagtaca 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2838 gatcgattgatgtgcttgtcgttgattatatttatctattcttcgttataagcaagtaca 2779
Query: 628 cactacaacggaaaagttatacgtttctgagagtatcagtgaggtggattacaagaagtc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2778 cactacaacggaaaagttatacgtttctgagagtatcagtgaggtggattacaagaagtc 2719
Query: 688 ttgaaaaagggacatctatgttctatctacattcaacaattcagtgatgatttttgtggc 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2718 ttgaaaaagggacatctatgttctatctacattcaacaattcagtgatgatttttgtggc 2659
Query: 748 agcaacaacatcctcatcacagaaacgcttaccagttaattggagtgcaattggtgcgtt 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2658 agcaacaacatcctcatcacagaaacgcttaccagttaattggagtgcaattggtgcgtt 2599
Query: 808 ttcgtactccttgctattatatctaacagaa-catcgtcgntgaaccatactttcttctt 866
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct: 2598 ttcgtactccttgctattatatctaacagaaccatcgtcgttgaaccatactttcttc-t 2540
Query: 867 cgta-tcgttagatttcaaaggttcagaaaacttagaatccaattc-acgtcatgtttc 923
|||| ||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 2539 cgtattcgttagatttcagaggttcagaaaccttagaatccaattcaacgtcatgtttc 2481
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7169
Number of Sequences: 1807
Number of extensions: 7169
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)