BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZF09RM1.SCF screened BAC_end
         (953 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1715                                                        1223   0.0  

>3x_Contig1715 
          Length = 16241

 Score = 1223 bits (617), Expect = 0.0
 Identities = 714/737 (96%), Gaps = 7/737 (0%)
 Strand = Plus / Minus

                                                                         
Query: 52    ctttatcaagtcctaatgttgattttcgctactacttagattgccatggttttttttgaa 111
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16225 ctttatcaag-cctaatgttgattttcgctactacttagattgccatggttttttttgaa 16167

                                                                         
Query: 112   cgtcaatgcaaattagtaatgctcttttcaggcattgtactaaaccttctcagcaagacc 171
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16166 cgtcaatgcaaattagtaatgctcttttcaggcattgtactaaaccttctcagcaagacc 16107

                                                                         
Query: 172   cacaagttggcaactgatattgattaagtgggtgatatttcttatatgaataatgttttt 231
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16106 cacaagttggcaactgatattgattaagtgggtgatatttcttatatgaataatgttttt 16047

                                                                         
Query: 232   tatatgtgtgttaatggtacgctccaacgtatataaatgcggcattttacatatttcatc 291
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16046 tatatgtgtgttaatggtacgctccaacgtatataaatgcggcattttacatatttcatc 15987

                                                                         
Query: 292   tccattcccctaaatttcatctcatcttaattaaaagcttcctatttctttcaattaaag 351
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15986 tccattcccctaaatttcatctcatcttaattaaaagcttcctatttctttcaattaaag 15927

                                                                         
Query: 352   gtttaaacagtaaggaatatcaatagttagtgttcagtgtagcattgcagtcaattgatt 411
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15926 gtttaaacagtaaggaatatcaatagttagtgttcagtgtagcattgcagtcaattgatt 15867

                                                                         
Query: 412   atccaccaaagtttttagtacatcgaataatagaaaagcatgccatctccaagcgactac 471
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15866 atccaccaaagtttttagtacatcgaataatagaaaagcatgccatctccaagcgactac 15807

                                                                         
Query: 472   cgttctcaattgcttaataacgtagccctaggatatggtttgatgagtttcacctggaga 531
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15806 cgttctcaattgcttaataacgtagccctaggatatggtttgatgagtttcacctggaga 15747

                                                                         
Query: 532   gcagaacctattgccccagaagctgcgtccaaaaccttcaagatagttcttgaatttact 591
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 15746 gcagaacctattgccccagaagctgcgtccaaaaccttcaagaaagttcttgaatttact 15687

                                                                         
Query: 592   gggtgat-aaaaggcgttgttcaatgtttggtgaattctacggtgaaacctttgaggcac 650
              |||||| |||||||||||||||||| |||||||||||||||||| ||||||||||  ||
Sbjct: 15686 -ggtgataaaaaggcgttgttcaatg-ttggtgaattctacggtg-aacctttgagcaac 15630

                                                                         
Query: 651   tacaagttgttgcattcctactttgtacagtatccggaagatcgtgaaaaagtaattatc 710
             |||||||||||||| ||||||||||   |||||||||||||||||||||| |||||||||
Sbjct: 15629 tacaagttgttgcaatcctactttgacaagtatccggaagatcgtgaaaaggtaattatc 15570

                                                                         
Query: 711   agtgctaaaagtgctgttgaactgcaaaccttgacccca-cccgtgatgctaaga-tgtt 768
             ||||||||| ||||||||||  |||||||||||| |||| || |||||||||||| ||||
Sbjct: 15569 agtgctaaaggtgctgttgacttgcaaaccttgagcccagccggtgatgctaagagtgtt 15510

                              
Query: 769   tgcccatctttcgaaaa 785
              || ||||| |||||||
Sbjct: 15509 agcgcatctatcgaaaa 15493


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6991
Number of Sequences: 1807
Number of extensions: 6991
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)