BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZF10FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1216 1570 0.0
>3x_Contig1216
Length = 5132
Score = 1570 bits (792), Expect = 0.0
Identities = 836/850 (98%), Gaps = 1/850 (0%)
Strand = Plus / Minus
Query: 81 tcaaagcattctacgttataattactggtgacgatcccagaattccaaaaggcagaggta 140
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1415 tcaaagcattcgacgttataattactggtgacgatcccagaattccaaaaggcagaggta 1356
Query: 141 aaccttttccagatatctggcaactggggttgaaggaattaaatgctaaattcaacacag 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1355 aaccttttccagatatctggcaactggggttgaaggaattaaatgctaaattcaacacag 1296
Query: 201 atattgagagtattttttgtctagtctttgaagatggtattcctggggtcaatgctggaa 260
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1295 atattgagagtaacgaatgtctagtctttgaagatggtattcctggggtcaatgctggaa 1236
Query: 261 agagttttggcgcatacgtcatctgggtccctcataaagatgcgattgcgctagtcaaag 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1235 agagttttggcgcatacgtcatctgggtccctcataaagatgcgattgcgctagtcaaag 1176
Query: 321 accacaaaatattaggcgatagaggtgaaatgctagaatctttagaacactttgaccgtt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1175 accacaaaatattaggcgatagaggtgaaatgctagaatctttagaacactttgaccgtt 1116
Query: 381 ccaagtttggattatagttaagtaaaagagagtacatatgtcttaactggatttcagaca 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1115 ccaagtttggattatagttaagtaaaagagagtacatatgtcttaactggatttcagaca 1056
Query: 441 aaggcatagttaatactcgaagtacttttttgaatagagagattaaataatgtcttctta 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 aaggcatagttaatactcgaagtacttttttgaatagagagattaaataatgtcttctta 996
Query: 501 taagttactacgaacttagttgacttaccgtcatgggatatatgttacatcgacgccttg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 taagttactacgaacttagttgacttaccgtcatgggatatatgttacatcgacgccttg 936
Query: 561 ttattgcttatagtggaggaatgaaaagagtaaacgttcagtgaacgtgagtcaatcggc 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 ttattgcttatagtggaggaatgaaaagagtaaacgttcagtgaacgtgagtcaatcggc 876
Query: 621 aaacaggacagccagttggatgagttaatttaacagtgaatcatcagagagggtagttct 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 aaacaggacagccagttggatgagttaatttaacagtgaatcatcagagagggtagttct 816
Query: 681 tgaacaaatatgaaatactttcaccgttgtgcaaacgacgaatagcttctgcaagcactg 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tgaacaaatatgaaatactttcaccgttgtgcaaacgacgaatagcttctgcaagcactg 756
Query: 741 aagagatatcaattgcatccaattntggacaacgtagcatcttttcttcgaaa-gaacag 799
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 755 aagagatatcaattgcatccaattttggacaacgtagcatcttttcttcgaaaggaacag 696
Query: 800 tatttgtgcaaactactctatcaagttttgagtgggtaatgttttcaatagctttgccag 859
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 695 tatttgtgcaaactactctatcaagttttgagtggttaatgttttcaatagctttgccag 636
Query: 860 atagaatgcccgtggtaacgatagcaatgacggacttggctttgtttttcaacanaactt 919
|||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 635 atagaatgccgtgggtaacgatagcaatgacggacttggctttgttttccaacagaactt 576
Query: 920 ctgcagcctt 929
||||||||||
Sbjct: 575 ctgcagcctt 566
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6348
Number of Sequences: 1807
Number of extensions: 6348
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)