BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZF10RM1.SCF screened BAC_end
         (970 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1696                                                        1164   0.0  

>3x_Contig1696 
          Length = 16725

 Score = 1164 bits (587), Expect = 0.0
 Identities = 652/666 (97%), Gaps = 7/666 (1%)
 Strand = Plus / Plus

                                                                         
Query: 56    aatactatcgatgggcagaaaaattcaaaaccgttgcc-catgagcgtaaagaagacaag 114
             ||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 10062 aatactagcgatgggcagaaaaattcagaaccgttgccacatgagcgtaaagaagacaag 10121

                                                                         
Query: 115   gtagccagaaatactgatgttaatgttacaggtggaaaaggacaaaataatgtgaaatca 174
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10122 gtagccagaaatactgatgttaatgttacaggtggaaaaggacaaaataatgtgaaatca 10181

                                                                         
Query: 175   gtacatcaaaatcccggaggacctcaaagggcgtcaccaagtccgtctcgttctaaccgc 234
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10182 gtacatcaaaatcccggaggacctcaaagggcgtcaccaagtccgtctcgttctaaccgc 10241

                                                                         
Query: 235   aacaacaatcactcaataactgatacaaggcgtggaccgtcgcatgcggactatgcgaat 294
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10242 aacaacaatcactcaataactgatacaaggcgtggaccgtcgcatgcggactatgcgaat 10301

                                                                         
Query: 295   cagagaaagcaggattcgagaagaggtccggctccgccagtgaatcagcatacctctaga 354
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10302 cagagaaagcaggattcgagaagaggtccggctccgccagtgaatcagcatacctctaga 10361

                                                                         
Query: 355   tatggaaaaagtcccagacaggataacagggaaaggcaaagtcgattccagagaaatgat 414
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10362 tatggaaaaagtcccagacaggataacagggaaaggcaaagtcgattccagagaaatgat 10421

                                                                         
Query: 415   tcatcaatatctaaaccggcattcaacagtgacaacagcttccagcagaacagagggcat 474
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10422 tcatcaatatctaaaccggcattcaacagtgacaacagcttccagcagaacagagggcat 10481

                                                                         
Query: 475   gaagtgcgcaacggtaggtttgacaacaaaaatagatggtctgatgcaagtaatgcctct 534
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10482 gaagtgcgcaacggtaggtttgacaacaaaaatagatggtctgatgcaagtaatgcctct 10541

                                                                         
Query: 535   cattcgcggaataccaacttacaggtcaaaaacaatcaagcagatgattcagaaggccat 594
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10542 cattcgcggaataccaacttacaggtcaaaaacaatcaagcagatgattcagaaggccat 10601

                                                                         
Query: 595   aactttcgtaaacctacagagtggaagaaagatctgtctcataacacacgtgggacgttt 654
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 10602 aactttcgtaaacctacagagtggaagaaagatctgtctcataacacacgtgg-acgttt 10660

                                                                         
Query: 655   ccaaacctaacaaaaacaggttttgggcttgcttcaaccgggaaagggtttaggacaaaa 714
             | || |||||||||||||||||| |||| |||| ||| ||| ||  ||| ||||||||||
Sbjct: 10661 cgaa-cctaacaaaaacaggttt-gggcatgct-caagcggaaa--ggtataggacaaaa 10715

                   
Query: 715   accccc 720
             ||||||
Sbjct: 10716 accccc 10721


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6551
Number of Sequences: 1807
Number of extensions: 6551
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)