BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZF11FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1342 1035 0.0
>3x_Contig1342
Length = 7422
Score = 1035 bits (522), Expect = 0.0
Identities = 619/646 (95%), Gaps = 4/646 (0%)
Strand = Plus / Minus
Query: 271 ttcgaacacaatatcggcatcttctgagccctccccgatgggaagaattgccaattcatt 330
||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3644 ttcgaacacgatatcgccatcttctgagccctccccgatgggaagaatttccaattcatt 3585
Query: 331 tatatcaccctgtcttgtttcggagattccgtcaccacttccgatgaccaagacgttacc 390
|| |||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3584 tagatcagcctggcttgtttcggagattccgtcaccacttccgatgacgaagacgttacc 3525
Query: 391 gtttctgtattgatgacttactgcgttattgaatgctaaagagtacactttctttgggag 450
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3524 gtttctgtattgatgacttagtgcgttattgaatgctaaagagtacactttctttgggag 3465
Query: 451 cgctgtggtataatcatttggtgcagttcttgctagagctctaccaccgttatgccttat 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3464 cgctgtggtataatcatttggtgcagttcttgctagagctctaccaccgttatgccttat 3405
Query: 511 tggtgaattagcgtcaccagctctggccataccacatcccttttgtggtaaaatctttct 570
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3404 tggtgaattagcgtcaccagctctggccataccagatcccttttgtggtaaaatctttct 3345
Query: 571 tctcgaataaccaacatcacttctgcctggggggttagaagacccaacacgtttactgtc 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3344 tctcgaataaccaacatcacttctgcctggggggttagaagacccaacacgtttactgtc 3285
Query: 631 attttcgtaaacaacagcacgccatagtaagtctcttctcaatggagcatcaaatactga 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3284 attttcgtaaacaacagcacgccatagtaagtctcttctcaatggagcatcaaatactga 3225
Query: 691 ggttggcactggtgcaaatgtcaatggttctaatgatgggaatgaacgaaccgttgctaa 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3224 ggttggcactggtgcaaatgtcaatggttctaatgatgggaatgaacgaaccgttgctaa 3165
Query: 751 ggtatatattggcggtagactagcattaggaaaggggttgttgggaacgtaacggacctg 810
||||||| |||||||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct: 3164 ggtatattttggcggtagactagcattaggaaggggtttgttggaaacgtaacggacctg 3105
Query: 811 tagagaata-ggaaaaaaattacaaaaaattacgagccatagtttagtaaatcgatcttt 869
||||||||| |||||| | | |||||||||||||||| |||| |||||||||||||| ||
Sbjct: 3104 tagagaatagggaaaagagtaacaaaaaattacgagcaatag-ttagtaaatcgatc-tt 3047
Query: 870 ctaaagataggtgatatagctgccttatggcggaaagatatcatca 915
||||| ||||||||||| ||| |||| |||||| ||||||||||
Sbjct: 3046 ctaaaagtaggtgatataactg-cttaatgcggaaggatatcatca 3002
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5345
Number of Sequences: 1807
Number of extensions: 5345
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)