BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZF11RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1209 856 0.0
>3x_Contig1209
Length = 5033
Score = 856 bits (432), Expect = 0.0
Identities = 618/672 (91%), Gaps = 6/672 (0%)
Strand = Plus / Plus
Query: 237 tatacccaattcgtcagcaagatgattgacaagactcaccagttgaatgctgtagactta 296
||||||||||| ||||| ||| | |||||||||| |||| ||||||| ||| || ||
Sbjct: 2767 tatacccaatttgtcagtaagttcattgacaagataaaccaattgaatgttgttgagttt 2826
Query: 297 ttttctgcaagcattacaagaaaacgatgacacagaagaatcattacaatatctaaagga 356
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2827 ttgt-tgcaagcattacaagaaaacgatgacacagaagaatcattacaatatctaaagga 2885
Query: 357 tcttcaaaaggaattcaaagaaattgatgaaaagaatcaaagaaacgatggtttaaaacc 416
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2886 tcttcaaaaggaattcaaagaaattgatgaaaagaagcaaagaaacgatggtttaaaacc 2945
Query: 417 tcatgtaaatgggaacttgctgttagatattgagattgctcgtgtgaaattggaaaaggg 476
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2946 tcatgtaaatgggaacttgttgttagatattgagattgctcgtgtgaaattggaaaaggg 3005
Query: 477 ggacctagttgaggtcagagacattctatacgctattgggaaaacacttgatgttcaaga 536
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 3006 ggacctagttgaggtcagagacatcctagacgctattgggaaaacacttgatgttcaaga 3065
Query: 537 ttcggtacctctcagagttaccggtgcctactactcgtgtaacgcttcctattaccaagt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3066 ttcggtacctctcagagttaccggtgcctactactcgtgtaacgcttcctattaccaagt 3125
Query: 597 aaagatagactttcacattttctattataccagtcttttatatctctcaacaatcactta 656
||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3126 aaagaaagacttcaacaatttctattataccagtcttttatatctctcaacaatcactt- 3184
Query: 657 cggatgatcaacagcagcgattgacacaactcgaacatcaacagttggcatacaatttgt 716
|||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 3185 cggaagaacaacagcagcgattgacacaactcgaacaacaacaattggcatacaatttgt 3244
Query: 717 gcattgcagcattgttaggtgaccatatctatattttc-gtgaactatctta-catcc-a 773
||||||||||||||||||||||| ||||||||| |||| |||||||| | | ||||| |
Sbjct: 3245 gcattgcagcattgttaggtgacaatatctataatttcggtgaactacttcagcatccaa 3304
Query: 774 ttatttccaggttttccaacaattaagaattcgaatggtttttcaaattcttgaacgcct 833
||||||| || |||| ||| || |||||| ||||||||| |||| |||||||||||| |
Sbjct: 3305 ttatttcaagtatttcaaacgataaagaatacgaatggttattcagattcttgaacgcat 3364
Query: 834 taactgtaaggggattcccaaaaatttgaaccaatttcaaaggaaagtattcccaaggtc 893
|||||| ||||||||| |||||| ||||| | ||||||||| ||||| |||||||||||
Sbjct: 3365 taactg-aaggggatttccaaaagtttgatcaaatttcaaaagaaagaattcccaaggta 3423
Query: 894 ccaatctaagct 905
||||||| ||||
Sbjct: 3424 ccaatcttagct 3435
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6746
Number of Sequences: 1807
Number of extensions: 6746
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)