BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZF12FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1783 1390 0.0
>3x_Contig1783
Length = 22123
Score = 1390 bits (701), Expect = 0.0
Identities = 805/828 (97%), Gaps = 10/828 (1%)
Strand = Plus / Plus
Query: 88 gataatttctggtgtagcagcactgcccaaaacttctttgatagccaacaacaagtattt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8854 gataatttctggtgtagcagcactgcccaaaacttctttgatagccaacaacaagtattt 8913
Query: 148 tccgacgatatcatattgtgctggttcaacttg-aaagcacgg--cttttggccgattt- 203
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 8914 tccgacgatatcatattgtgctggttcaacttgtaaagcacggtgcttttggccgatttc 8973
Query: 204 attcacggtat-caataagacggacaagtcatcaatgttcttagcagcagccaaaacggt 262
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8974 attcacggcaggcaataagacggacaagtcatcaatgttcttagcagcagccaaaacggt 9033
Query: 263 cattgccaatgcggtgggttgtctacccttcttttgattcactctgttgaaagtgttcaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9034 cattgccaatgcggtgggttgtctacccttcttttgattcactctgttgaaagtgttcaa 9093
Query: 323 aaggacagggttttcagaaagcatgttgttgtagaagattttggtgatggtaacaccatg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9094 aaggacagggttttcagaaagcatgttgttgtagaagattttggtgatggtaacaccatg 9153
Query: 383 ttgttctagtactggcacggtggccttcacgatatttttcgtattaacggacagcataat 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9154 ttgttctagtactggcacggtggccttcacgatatttttcgtattaacggacagcataat 9213
Query: 443 tgatagcgatgagcttgaatttaaagggtatagggtacactttgaaatagagatatattt 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9214 tgatagcgatgagcttgaatttaaagggtatagggtacactttgaaatagagatatattt 9273
Query: 503 cactggtgaggggagagaagttaacacaatgaatgtacaatattatactacttgtccaaa 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9274 cactggtgaggggagagaagttaacacaatgaatgtacaatattatactacttgtccaaa 9333
Query: 563 gcgatgaactcaacgagaacaccgattagattcaactatccatgcatatatatacttttt 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9334 gcgatgaactcaacgagaacaccgattagattcaactatccatgcatatatatacttttt 9393
Query: 623 ctcgaaccaagctgatggactgaaagaaactgttcgctactacagatgaaatctccttcc 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9394 ctcgaaccaagctgatggactgaaagaaactgttcgctactacagatgaaatctccttcc 9453
Query: 683 aacggttcgtgggcatgaatatcgtagctacactatacttataaacctttagtataccct 742
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 9454 aacggttcgtgggcatgaatatcgtagctacactatactcataaaccttaggtataccct 9513
Query: 743 atcgtgccataataagacccc-agtatcaacggatgtaatgtttagta-gagg-ataaat 799
||||||||||||||||||||| ||||||||||||||||||| |||||| |||| | ||||
Sbjct: 9514 atcgtgccataataagaccccaagtatcaacggatgtaatg-ttagtaggaggaaaaaat 9572
Query: 800 aatcattcaatcatttccagatattaattagcaaactaagcaaaacaatggtagaatata 859
|||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 9573 aatcatccaatcatttccagatattaataagcaaactaagcaagacaatggtagaatata 9632
Query: 860 tgaaacttggctattgaccgatggctgttaattgttgggccaaaactg 907
||| ||||||||| |||||||||||||| |||||| ||||||| ||||
Sbjct: 9633 tgagacttggcta-tgaccgatggctgtaaattgtagggccaagactg 9679
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6281
Number of Sequences: 1807
Number of extensions: 6281
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)