BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZF12RM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1713 1368 0.0
>3x_Contig1713
Length = 18539
Score = 1368 bits (690), Expect = 0.0
Identities = 746/762 (97%), Gaps = 2/762 (0%)
Strand = Plus / Plus
Query: 52 taatgcctttgatgtgcagaaatattagcttcattggccttcaactcgttatatcttcct 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8286 taatgcctttgatgtgcagaaatattagcttcattggccttcaactcgttatatcttcct 8345
Query: 112 agtgcattaaattcaaaagatgattcgttcaattcgagcttatatgggagtcgacgatgt 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8346 agtgcattaaattcaaaagatgattcgttcaattcgagcttatatgggagtcgacgatgt 8405
Query: 172 ccttcaccgttgaattggaaattcttgatctttggagatagttgagaccaaatggcaaat 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8406 ccttcaccgttgaattggaaattcttgatctttggagatagttgagaccaaatggcaaat 8465
Query: 232 ggatcgaattttggtgattttttatacttcccgatgaatttttgtaacaacccattgaac 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8466 ggatcgaattttggtgattttttatacttcccgatgaatttttgtaacaacccattgaac 8525
Query: 292 aatatggaatttggtttccaatcttgatctgggcttccttcttcttctttacccacagag 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8526 aatatggaatttggtttccaatcttgatctgggcttccttcttcttctttacccacagag 8585
Query: 352 ttagccgatgttactggaacttgcaaagaactttgattgttaaggaaagtgaccgaaagc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8586 ttagccgatgttactggaacttgcaaagaactttgattgttaaggaaagtgaccgaaagc 8645
Query: 412 ggttgagcagaagggttggtgtataacacggatctggcttgcaaattgtacacttctggt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8646 ggttgagcagaagggttggtgtataacacggatctggcttgcaaattgtacacttctggt 8705
Query: 472 cttgaccaatttagagtcttgatggacatgaacccgggcgaaaatggactattgttggaa 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8706 cttgaccaatttagagtcttgatggacatgaacccgggcgaaaatggactattgttggaa 8765
Query: 532 acacaatgttcatcgatatcgactattggatcagaaacagtgggatcgatcaatttagtg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8766 acacaatgttcatcgatatcgactattggatcagaaacagtgggatcgatcaatttagtg 8825
Query: 592 ttttgtaagaaagcctgaaccccaagtggtttcaaacgatcgtaatcaaaaagcttacgc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8826 ttttgtaagaaagcctgaaccccaagtggtttcaaacgatcgtaatcaaaaagcttacgc 8885
Query: 652 ttgaacttggtctctaattttctcaccgttttcagagggatat-tttacgaaccacaaag 710
|||||||||||||||||||| ||||||||| |||||||| || ||||||||||||||||
Sbjct: 8886 ttgaacttggtctctaatttcttcaccgtttccagagggaaatatttacgaaccacaaag 8945
Query: 711 gaac-atccaattttctctcaagttccatatcgataaaatccgtcaatgacgattaattc 769
|||| ||||||||| |||| ||||||||||||||||||| ||||||||||| ||| |
Sbjct: 8946 gaacaatccaatttctcctcaggttccatatcgataaaatcgttcaatgacgataaatcc 9005
Query: 770 gcccaatcgtaccaattaaaaggtaatttgaactgtgacccc 811
|||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 9006 gcccaatcgtaccaattaaagggtaattcgaactgtgacccc 9047
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7802
Number of Sequences: 1807
Number of extensions: 7802
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)