BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZG01FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig727 1604 0.0
3x_Contig631 652 0.0
3x_Contig1696 246 7e-65
3x_Contig939 190 3e-48
3x_Contig354 190 3e-48
3x_Contig1204 151 3e-36
3x_Contig582 147 5e-35
3x_Contig1376 145 2e-34
3x_Contig1747 143 7e-34
3x_Contig1718 143 7e-34
3x_Contig1088 143 7e-34
>3x_Contig727
Length = 2486
Score = 1604 bits (809), Expect = 0.0
Identities = 837/844 (99%), Gaps = 2/844 (0%)
Strand = Plus / Minus
Query: 86 ccaaaggcattcccatgtttcttctattatggccatgctcgtgggtaaagcatatttacc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1518 ccaaaggcattcccatgtttcttctattatggccatgctcgtgggtaaagcatatttacc 1459
Query: 146 agaacctattgtgtcatctgtggccccttttacatgacaaaagtaagtcggttatattct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1458 agaacctattgtgtcatctgtggccccttttacatgacaaaagtaagtcggttatattct 1399
Query: 206 attcttgtcgtaaatgtttcaagaatgaagcggtggctcaatggtagagctttcgactcc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1398 attcttgtcgtaaatgtttcaagaatgaagcggtggctcaatggtagagctttcgactcc 1339
Query: 266 agttaaattctgggaattttccaaggaaacaaaattgcaatcgaagggttgcaggttcaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1338 agttaaattctgggaattttccaaggaaacaaaattgcaatcgaagggttgcaggttcaa 1279
Query: 326 ttcctgtccgtttcattttttaacatttttgcatagctagtcacatgactacttttgcca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1278 ttcctgtccgtttcattttttaacatttttgcatagctagtcacatgactacttttgcca 1219
Query: 386 cgtggattatgattttgtccaataaactctcatcgaatttactattccgcgatagtttaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1218 cgtggattatgattttgtccaataaactctcatcgaatttactattccgcgatagtttaa 1159
Query: 446 tggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattccccgtcgcggaggaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1158 tggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattccccgtcgcggaggaa 1099
Query: 506 tttttttacatttttgtatcaaggtacaatctcatcctaaaacccattgtagtacagaaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1098 tttttttacatttttgtatcaaggtacaatctcatcctaaaacccattgtagtacagaaa 1039
Query: 566 cagagaagcattattaacatacactgaacagagactctaaccttatcaatcctcacatgc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 cagagaagcattattaacatacactgaacagagactctaaccttatcaatcctcacatgc 979
Query: 626 ccaatgttgtactttcttcaagattaacgaataatgattcagtgttcttgcaggaatgga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 ccaatgttgtactttcttcaagattaacgaataatgattcagtgttcttgcaggaatgga 919
Query: 686 ttaaaccttcggtaaggccttattanttaaagaatgaaaagacgaaattctggccagaac 745
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 918 ttaaaccttcggtaaggccttattatttaaagaatgaaaagacgaaattctggccagaac 859
Query: 746 aacgtgaactggtaacggacttactagaacatgatatcatagagtcagctttccaaacgg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 aacgtgaactggtaacggacttactagaacatgatatcatagagtcagctttccaaacgg 799
Query: 806 cttttgaatcccgcacctcagaggttcgtcagaattgttaaatttcatagagtaaacgat 865
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 798 c-tttgaatcccgcacctcagaggttcgtcagaattgttaaattccatagagtaaacgat 740
Query: 866 tacaccgtttatgcaacggatagnagactctacagcattaattctatgctacttcactgg 925
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 739 tacaccgtttatgcaacgattag-agactctacagcattaattctatgctacttcactgt 681
Query: 926 agac 929
||||
Sbjct: 680 agac 677
>3x_Contig631
Length = 2339
Score = 652 bits (329), Expect = 0.0
Identities = 392/408 (96%), Gaps = 4/408 (0%)
Strand = Plus / Minus
Query: 431 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 1021
Query: 491 cccgtcgcggagga-atttttttacatttttgtatcaaggtacaatctcatcctaaaacc 549
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1020 cccgtcgcggagtatatttttttacatttttgtatcaaggtacaatctcatcctaacccc 961
Query: 550 cattgtagtacagaaacagagaagcattattaacatacactgaacag-agactctaacct 608
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 960 cattgtagtacagaaacagagaagcattattaacatacactgaacaggagactctaacct 901
Query: 609 tatcaatcctcacatgcccaatgttgtactttcttcaagattaacgaataatgattcagt 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 tatcaatcctcacatgcccaatgttgtactttcttcaagattaacgaataatgattcagt 841
Query: 669 gttcttgcaggaatggattaaaccttcggtaaggccttattanttaaagaatgaaaagac 728
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 840 gttcttgcaggaatggattaaaccttcggtaaggccttattatttaaagaatgaaaagac 781
Query: 729 gaaattctggccagaacaacgtga-actggtaacggacttactagaacatgatatcatag 787
|||||||||||||||||||||||| |||||| ||||||||||||| ||||||| ||||||
Sbjct: 780 gaaattctggccagaacaacgtgacactggtcacggacttactagcacatgatctcatag 721
Query: 788 agtcagctttccaaacggcttttgaatcccgcacctcagaggttcgtc 835
|||||||||||| ||||| |||| ||||||||||| ||||||||||
Sbjct: 720 agtcagctttccccacggc-tttgcctcccgcacctccgaggttcgtc 674
>3x_Contig1696
Length = 16725
Score = 246 bits (124), Expect = 7e-65
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 223 ttcaagaatgaagcggtggctcaatggtagagctttcgactccagttaaattctgggaat 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ttcaagaatgaagcggtggctcaatggtagagctttcgactccagttaaattctgggaat 769
Query: 283 tttccaaggaaacaaaattgcaatcgaagggttgcaggttcaattcctgtccgtttcatt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tttccaaggaaacaaaattgcaatcgaagggttgcaggttcaattcctgtccgtttcatt 709
Query: 343 tttt 346
||||
Sbjct: 708 tttt 705
>3x_Contig939
Length = 3877
Score = 190 bits (96), Expect = 3e-48
Identities = 112/116 (96%), Gaps = 1/116 (0%)
Strand = Plus / Plus
Query: 230 atgaagcggtggctcaatggtagagctttcgactccagttaaattctgggaattttccaa 289
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
Sbjct: 2792 atgaagcggtggctcaatggtagagctttcgactccagttaaatcctgg-aattttctga 2850
Query: 290 ggaaacaaaattgcaatcgaagggttgcaggttcaattcctgtccgtttcattttt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2851 ggaaacaaaattgcaatcgaagggttgcaggttcaattcctgtccgtttcattttt 2906
>3x_Contig354
Length = 1443
Score = 190 bits (96), Expect = 3e-48
Identities = 115/120 (95%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 226 aagaatgaagcggtggctcaatggtagagctttcgactccagttaaattctgggaatttt 285
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 958 aagaatgaagcggtggctcaatggtagagctttcgactccagttaaatcctggaaattt- 1016
Query: 286 ccaaggaaacaaaattgcaatcgaagggttgcaggttcaattcctgtccgtttcattttt 345
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 ctatggaaacaaaattgcaatcgaagggttgcaggttcaattcctgtccgtttcattttt 1076
>3x_Contig1204
Length = 5869
Score = 151 bits (76), Expect = 3e-36
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 427 ctattccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttca 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5714 ctattccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttca 5773
Query: 487 attccccgtcgcggag 502
||||||||||||||||
Sbjct: 5774 attccccgtcgcggag 5789
>3x_Contig582
Length = 2827
Score = 147 bits (74), Expect = 5e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 431 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1714 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 1773
Query: 491 cccgtcgcggagga 504
||||||||||||||
Sbjct: 1774 cccgtcgcggagga 1787
>3x_Contig1376
Length = 7449
Score = 145 bits (73), Expect = 2e-34
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 431 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6411 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 6470
Query: 491 cccgtcgcggaggaatttttt 511
|||||||||||| |||||||
Sbjct: 6471 cccgtcgcggagtgatttttt 6491
>3x_Contig1747
Length = 15671
Score = 143 bits (72), Expect = 7e-34
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 431 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2462 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 2403
Query: 491 cccgtcgcggag 502
||||||||||||
Sbjct: 2402 cccgtcgcggag 2391
>3x_Contig1718
Length = 19496
Score = 143 bits (72), Expect = 7e-34
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 431 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4332 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 4273
Query: 491 cccgtcgcggag 502
||||||||||||
Sbjct: 4272 cccgtcgcggag 4261
>3x_Contig1088
Length = 4585
Score = 143 bits (72), Expect = 7e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 431 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1440 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 1499
Query: 491 cccgtcgcggag 502
||||||||||||
Sbjct: 1500 cccgtcgcggag 1511
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5889
Number of Sequences: 1807
Number of extensions: 5889
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 11
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)