BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZG01RM1.SCF screened BAC_end
(995 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1704 880 0.0
>3x_Contig1704
Length = 14855
Score = 880 bits (444), Expect = 0.0
Identities = 488/500 (97%), Gaps = 2/500 (0%)
Strand = Plus / Plus
Query: 46 cttgtctgaacttagaaataatgttaatttttctagacgttccctttgttccaagacgcc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 cttgtctgaacttagaaataatgttaatttttctagacgttccctttgttccaagacgcc 267
Query: 106 cactttataaatcaaccctaattcttgctcaaacaaatcttcattgactgtgatagttag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cactttataaatcaaccctaattcttgctcaaacaaatcttcattgactgtgatagttag 327
Query: 166 agttttggtcttgacattgatgtgcttcattataattggaggatcagctttggggtaaag 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agttttggtcttgacattgatgtgcttcattataattggaggatcagctttggggtaaag 387
Query: 226 gatattaaaggagtctaagtgattaaacgctgatcttaactgtttgaatgcttttactgt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gatattaaaggagtctaagtgattaaacgctgatcttaactgtttgaatgcttttactgt 447
Query: 286 ggtagatatcgtgtcgacaatagtataaaatctgaaatggtattccatcttcaaagtcat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggtagatatcgtgtcgacaatagtataaaatctgaaatggtattccatcttcaaagtcat 507
Query: 346 tgattctgaagacaactgatagccgtcttgtttcgagttgtacaatttgattaaggccat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgattctgaagacaactgatagccgtcttgtttcgagttgtacaatttgattaaggccat 567
Query: 406 cttgagcagtggaacgtagacagcgtgattctttgtgtatactgatttgacaagaagatc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cttgagcagtggaacgtagacagcgtgattctttgtgtatactgatttgacaagaagatc 627
Query: 466 aaggtctttcaacagaaaaacctgattgaacacccaaaagatatttcatatttagttaag 525
|||||| |||||||||||||||||| ||| |||| || |||||||||| |||||||||
Sbjct: 628 aaggtc-ttcaacagaaaaacctgaatgagcaccagaagtatatttcata-ttagttaag 685
Query: 526 ataattaacaacgtcctatt 545
| | |||||||||| ||||
Sbjct: 686 aataataacaacgtcatatt 705
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8613
Number of Sequences: 1807
Number of extensions: 8613
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 995
length of database: 10,358,551
effective HSP length: 16
effective length of query: 979
effective length of database: 10,329,639
effective search space: 10112716581
effective search space used: 10112716581
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)