BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZG02RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1706 1059 0.0
>3x_Contig1706
Length = 16303
Score = 1059 bits (534), Expect = 0.0
Identities = 677/718 (94%), Gaps = 5/718 (0%)
Strand = Plus / Plus
Query: 50 cactcgttctagtcacaatttgatgttgttgggttctcgcctcaattctaagtcgtttaa 109
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10984 cactcgttctagccacaatttgatgttgttgggttctcgcctcaattctaagtcgtttaa 11043
Query: 110 tctaatagtgtggttttttattaatgaggttagagtgtcggcatgtagtcttatatttgc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11044 tctaatagtgtggttttttattaatgaggttagagtgtcggcatgtagtcttatatttgc 11103
Query: 170 gaacagccgttgcttttctgaattatcgtctttcatcttttgaattaattcttgggtcaa 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11104 gaacagccgttgcttttctgaattatcgtctttcatcttttgaattaattcttgggtcaa 11163
Query: 230 tagctcctccatacgaatccaaaaatcatataatacagaaaattcgataatgtctttagt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11164 tagctcctccatacgaatccaaaaatcatataatacagaaaattcgataatgtctttagt 11223
Query: 290 ttcgcttataactttctctaagtacagctcagcttccgttatttttccttgacgtatcag 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11224 ttcgcttataactttctctaagtacagctcagcttccgttatttttccttgacgtatcag 11283
Query: 350 gttaaatatcaaatatgtcttaagttcacccttcttgaaagggaataattcgatacattg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11284 gttaaatatcaaatatgtcttaagttcacccttcttgaaagggaataattcgatacattg 11343
Query: 410 gtccactaccgcagcaacccctgctgaattatccacaagaatcattgaagtgatgtaact 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11344 gtccactaccgcagcaacccctgctgaattatccacaagaatcattgaagtgatgtaact 11403
Query: 470 aacgtaaagttcaaataaacttgtctgagatggctttaaattaggtgatagatgtttttc 529
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 11404 aacgtaaagttcaaataaacttgtctgagatggctttaaattaggtgatcgatgtttttc 11463
Query: 530 aaatactcgaacgatcgtgctccaatcatgagtctttaaaatgtagatcaataaaagctc 589
||||| ||||| | | |||||||||||||||||||| |||| | ||||| | |
Sbjct: 11464 aaataatcgaaagctagtgctccaatcatgagtcttccccatgtcgctcaatcccggata 11523
Query: 590 tatgtcgtcacaaataaatgaatatctctgtaggattgaagaagaccagaggtctgt-at 648
|||||||| | |||||| ||||||||| ||| |||||| ||||||||||||||||| ||
Sbjct: 11524 tatgtcgtaaaaaataagtgaatatctatgtcagattgaggaagaccagaggtctgtcat 11583
Query: 649 caaaaattcg-cgaatgctctccgggaacaaatta-ttgatggaatactct-aagaaagt 705
| |||||||| |||||| | |||| ||||||| || | |||||||| ||| ||||||||
Sbjct: 11584 c-aaaattcgtcgaatgatatccgtgaacaaaatagtagatggaatcatctaaagaaagt 11642
Query: 706 tcatacctcttgttggctattaaccattcattgataaggaaatcgatgacaacccgcc 763
||||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||
Sbjct: 11643 tcatacctcttgttgtctattaacaattcattgataatgaaatcgatgacaacacgcc 11700
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6876
Number of Sequences: 1807
Number of extensions: 6876
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)