BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZG03FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig826 1576 0.0
>3x_Contig826
Length = 2477
Score = 1576 bits (795), Expect = 0.0
Identities = 828/840 (98%)
Strand = Plus / Minus
Query: 90 tctttcaatttcgtatggtcttcgagacacagaatggagatctccgttcaaaacacattc 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 tctttcaatttcgtatggtcttcgagacacagaatggagatctccgttcaaaacacattc 867
Query: 150 tactactttcaaagcgtcatcgttattttcaatgtaagctctattgagcgttggcttgac 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tactactttcaaagcgtcatcgttattttcaatgtaagctctattgagcgttggcttgac 807
Query: 210 gtccatatgctaaaatgacgggaaaacgggaaaaacagattaaaacttaaaataaaaaca 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gtccatatgctaaaatgacgggaaaacgggaaaaacagattaaaacttaaaataaaaaca 747
Query: 270 acgacaacagaaaacaacgatatttgtgtgtgccttgttttatggcctgtatgaaataac 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 acgacaacagaaaacaacgatatttgtgtgtgccttgttttatggcctgtatgaaataac 687
Query: 330 ctatgctgacgacgtcttcttgctcatggatctgatcctagctgtattctttgaaacagg 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ctatgctgacgacgtcttcttgctcatggatctgatcctagctgtattctttgaaacagg 627
Query: 390 gtccaatgcgtctaatataaaggaacctgaattggaaagtggcgcagagggatgtgaaaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gtccaatgcgtctaatataaaggaacctgaattggaaagtggcgcagagggatgtgaaaa 567
Query: 450 acgaaccaaaactgtggcaaacaccagggagaagtagtaacttctatttgatatgatgta 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acgaaccaaaactgtggcaaacaccagggagaagtagtaacttctatttgatatgatgta 507
Query: 510 atatgatctatatatatatatccatatatatttatattcatatttacataattatataca 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atatgatctatatatatatatccatatatatttatattcatatttacataattatataca 447
Query: 570 tatcgtatcatttcaaaatcaacacatagcgaaagggaatgatgcataagagaacaaagc 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tatcgtatcatttcaaaatcaacacatagcgaaagggaatgatgcataagagaacaaagc 387
Query: 630 agagcatacccagggccagaaactcatctggaaaaccccatatacacagcacagaaccat 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agagcatacccagggccagaaactcatctggaaaaccccatatacacagcacagaaccat 327
Query: 690 gcacatgaaccgaaaggaaaaacagaatacagaatggaacgagaagtcaaaaaggaaaac 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gcacatgaaccgaaaggaaaaacagaatacagaatggaacgagaagtcaaaaaggaaaac 267
Query: 750 agaatgggaagtctcttagaagagaactcagtaagacaagagattaacagcgagaaaaaa 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agaatgggaagtctcttagaagagaactcagtaagacaagagattaacagcgagaaaaaa 207
Query: 810 gtattatttagagaaagaaagataaaacacgnagagagaaagcttggggccanaaggtat 869
|||| ||| ||||||||||||| ||||||| |||||||||||| ||||||| |||||
Sbjct: 206 gtataattcagagaaagaaagaaaaaacacagagagagaaagctaggggccaaaaggtta 147
Query: 870 taccgagacaggacaaacaggacanacaggactaacaggactaacattggagtatatcta 929
|||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||
Sbjct: 146 taccgagacaggacaaacaggacaaacaggactaacaggactaccattgaagtatatcta 87
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,333
Number of Sequences: 1807
Number of extensions: 10333
Number of successful extensions: 395
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)