BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZG03RM1.SCF screened BAC_end
         (961 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig853                                                         1243   0.0  

>3x_Contig853 
          Length = 2329

 Score = 1243 bits (627), Expect = 0.0
 Identities = 725/751 (96%), Gaps = 5/751 (0%)
 Strand = Plus / Minus

                                                                        
Query: 62   tgatgttgtataaatcggtacacagttggtagaattggtagaaaccccagcagattcttg 121
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 tgatgttgtagaaatcggtacacagttggtagaattggtagaaaccccagcagattcttg 1010

                                                                        
Query: 122  ccaagaagaagatcaagatcaaaacgacattgttcaccaattggatcacgttacacacct 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 ccaagaagaagatcaagatcaaaacgacattgttcaccaattggatcacgttacacacct 950

                                                                        
Query: 182  tggccatgacagtctgacagtctttggtcagttgtggcaagtacttgatcccgaaccatc 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  tggccatgacagtctgacagtctttggtcagttgtggcaagtacttgatcccgaaccatc 890

                                                                        
Query: 242  tgatattcaagaatggattggatagctcgaacatcaggaaaatacctgcgtagtagttga 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889  tgatattcaagaatggattggatagctcgaacatcaggaaaatacctgcgtagtagttga 830

                                                                        
Query: 302  tgtaaggttttaaaccaatagcataaaccaccgtagagatcaaaccgtgcagcacgaatg 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829  tgtaaggttttaaaccaatagcataaaccaccgtagagatcaaaccgtgcagcacgaatg 770

                                                                        
Query: 362  ggagggtagagtagaccaatgaaatgtagatatcccataggaagtacccaattgcgaaaa 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769  ggagggtagagtagaccaatgaaatgtagatatcccataggaagtacccaattgcgaaaa 710

                                                                        
Query: 422  cgcataccttcacgttatatgggtccatgccaaagatacgatcgtgagagtttagatctg 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709  cgcataccttcacgttatatgggtccatgccaaagatacgatcgtgagagtttagatctg 650

                                                                        
Query: 482  gtttttcattgttatatgcaatggcctcgaaactgagataaagcacgatcagagattgga 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649  gtttttcattgttatatgcaatggcctcgaaactgagataaagcacgatcagagattgga 590

                                                                        
Query: 542  tccaactcaccagacgaacggcactctggttgacaaggtctgcatgctgcttttccttag 601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589  tccaactcaccagacgaacggcactctggttgacaaggtctgcatgctgcttttccttag 530

                                                                        
Query: 602  acttacgttgggtcttcgtagtcttcggatccccaggat-acctattagaagctagaagt 660
            |||||||||||   |||||||||| ||||| |||||||| |||||| |||||||||| ||
Sbjct: 529  acttacgttggtctttcgtagtctccggat-cccaggataacctataagaagctagaggt 471

                                                                        
Query: 661  ggggaataagacccgttgagatatcaggaattgcgcatgatacccgacgggcatgtacaa 720
             |||||||||||||||||||||| ||||||| ||||||||||||||||||  ||||||||
Sbjct: 470  -gggaataagacccgttgagataacaggaatagcgcatgatacccgacggcaatgtacaa 412

                                                                        
Query: 721  cacagggtgtaaattgaatag-atcacatttcgagt-atccatccattgaattcgagata 778
            ||||| |||||||||| |||| ||||||||   ||| |||||||||||| ||||||||||
Sbjct: 411  cacagtgtgtaaattggatagaatcacattcgaagtaatccatccattggattcgagata 352

                                           
Query: 779  tgggatcacgttcttcgtcaaatgaaggtgc 809
            ||||||||||| ||  ||||||||| |||||
Sbjct: 351  tgggatcacgtactcggtcaaatgagggtgc 321


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5747
Number of Sequences: 1807
Number of extensions: 5747
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)