BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZG04RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1570 1007 0.0
>3x_Contig1570
Length = 12233
Score = 1007 bits (508), Expect = 0.0
Identities = 521/524 (99%), Gaps = 1/524 (0%)
Strand = Plus / Plus
Query: 48 tggtcaattcggtttttgaatcagtggaattattaattaagggcggattccaaccaaagc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8289 tggtcaattcggtttttgaatcagtggaattattaattaagggcggattccaaccaaagc 8348
Query: 108 gtactgtgatcttggcatttggatttgacgaagaagttggtggcggatatggtgcccaga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8349 gtactgtgatcttggcatttggatttgacgaagaagttggtggcggatatggtgcccaga 8408
Query: 168 ccataaacgagcaccttatggacaaatatggcactgacgggatatatgccattgtagatg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8409 ccataaacgagcaccttatggacaaatatggcactgacgggatatatgccattgtagatg 8468
Query: 228 agggtggaagttcggtagagaaaattggtgacacctatttcgctttaccggcagttggtg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8469 agggtggaagttcggtagagaaaattggtgacacctatttcgctttaccggcagttggtg 8528
Query: 288 aaaagggttcattaagncagcataattcagttgaacacaaagggaggacattcttcggtg 347
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8529 aaaagggttcattaag-cagcataattcagttgaacacaaagggaggacattcttcggtg 8587
Query: 348 cctcctgaaaacactggtattggtataatggctgatttgatccatagtgtagagacgaat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8588 cctcctgaaaacactggtattggtataatggctgatttgatccatagtgtagagacgaat 8647
Query: 408 ccattcaaaccgtccctccatttggaaaatccgttcttgaaacatttgtactgtatggta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8648 ccattcaaaccgtccctccatttggaaaatccgttcttgaaacatttgtactgtatggta 8707
Query: 468 gaacacactgacactgacgatatcggtcttcccagaaatgcaatccgtcattacgagcac 527
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 8708 gaacacactgacactgacgatatcggtctccccagaaatgcaatccgtcattacgagcac 8767
Query: 528 agcaagtatgcaagggaccatggggtagattgggtcagtggtaa 571
|||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 8768 agcaagtatgcaagggaccatgtggtagattgggtcagtggtaa 8811
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6254
Number of Sequences: 1807
Number of extensions: 6254
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)