BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC8ZG05FM1.SCF screened BAC_end (912 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1106 1405 0.0 >3x_Contig1106 Length = 5510 Score = 1405 bits (709), Expect = 0.0 Identities = 779/798 (97%), Gaps = 4/798 (0%) Strand = Plus / Minus Query: 114 ttgactggggtgctacccaatttagatgatcttaacaagagttaattgcctccttttgtt 173 |||||||||||||| || | |||||||||||||||||||||| ||||||||||||||||| Sbjct: 2185 ttgactggggtgctgccgagtttagatgatcttaacaagagtaaattgcctccttttgtt 2126 Query: 174 gtaaaaagatactccaaaaaggaaccaatcgtgtttatagtttttttataggtgttaaat 233 ||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| Sbjct: 2125 gtaaaaagatactccaaaaaggaaccaatcgtgtttatagtattaagagaggtgttaaat 2066 Query: 234 tataagttcaaggaggctttaacaacaccagtagcaattttgatcttaaagaagtatcct 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2065 tataagttcaaggaggctttaacaacaccagtagcaattttgatcttaaagaagtatcct 2006 Query: 294 gaattactctctgaagaagtatctgatatggacaatttaatcaacagcgaggagttgaaa 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2005 gaattactctctgaagaagtatctgatatggacaatttaatcaacagcgaggagttgaaa 1946 Query: 354 actcttttgagatcgttattcaaaatctacaaagatattgtgttccaacagacggtggaa 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1945 actcttttgagatcgttattcaaaatctacaaagatattgtgttccaacagacggtggaa 1886 Query: 414 ttgaataagaaaaccattaagcttatgaaggaacatcataaagcacaaatacgaactggt 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1885 ttgaataagaaaaccattaagcttatgaaggaacatcataaagcacaaatacgaactggt 1826 Query: 474 aaggaatccagtgaatatcttgatgattttaatgagcttaatccaatttttgaaaagttc 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1825 aaggaatccagtgaatatcttgatgattttaatgagcttaatccaatttttgaaaagttc 1766 Query: 534 tctacggttgcaacggcgctagcggaagcctttaacgtggatccaccagaacttttagat 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1765 tctacggttgcaacggcgctagcggaagcctttaacgtggatccaccagaacttttagat 1706 Query: 594 atagaacaaagtttaaaagagcaggagccatccataattacgcctgcatctgactggaag 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1705 atagaacaaagtttaaaagagcaggagccatccataattacgcctgcatctgactggaag 1646 Query: 654 gagaagcaagagccaatttgggagaacgaagaanacaggaggttttatgagaatctggct 713 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1645 gagaagcaagagccaatttgggagaacgaagaaaacaggaggttttatgagaatctggct 1586 Query: 714 gatttaagtgccgcctatgctacttatga-cccagaaaaaacaccaagtccagaagacgt 772 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1585 gatttaagtgccgcctatgctacttatgaccccagaaaaaacaccaagtccagaagacgt 1526 Query: 773 tatagcattatttgctgattttgagacagtngagactaaagatg-aatagatgaaatttc 831 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct: 1525 tatagcattatttgctgattttgagacagtagagactaaagatgaaatagatgaaatttc 1466 Query: 832 acgtcgttactggttgcaaaatcttgataac-aagcgacagaaaaga-aatcatgaagtt 889 ||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||| Sbjct: 1465 acgtcgttactggttgcaaaatcttgataacaaagcgacaagaaagagactcatgaagtt 1406 Query: 890 tttcgtggaatgtnaaga 907 ||||||||||||| |||| Sbjct: 1405 tttcgtggaatgtaaaga 1388 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6858 Number of Sequences: 1807 Number of extensions: 6858 Number of successful extensions: 51 Number of sequences better than 1.0e-20: 1 length of query: 912 length of database: 10,358,551 effective HSP length: 16 effective length of query: 896 effective length of database: 10,329,639 effective search space: 9255356544 effective search space used: 9255356544 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)