BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZG05FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1106 1405 0.0
>3x_Contig1106
Length = 5510
Score = 1405 bits (709), Expect = 0.0
Identities = 779/798 (97%), Gaps = 4/798 (0%)
Strand = Plus / Minus
Query: 114 ttgactggggtgctacccaatttagatgatcttaacaagagttaattgcctccttttgtt 173
|||||||||||||| || | |||||||||||||||||||||| |||||||||||||||||
Sbjct: 2185 ttgactggggtgctgccgagtttagatgatcttaacaagagtaaattgcctccttttgtt 2126
Query: 174 gtaaaaagatactccaaaaaggaaccaatcgtgtttatagtttttttataggtgttaaat 233
||||||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct: 2125 gtaaaaagatactccaaaaaggaaccaatcgtgtttatagtattaagagaggtgttaaat 2066
Query: 234 tataagttcaaggaggctttaacaacaccagtagcaattttgatcttaaagaagtatcct 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2065 tataagttcaaggaggctttaacaacaccagtagcaattttgatcttaaagaagtatcct 2006
Query: 294 gaattactctctgaagaagtatctgatatggacaatttaatcaacagcgaggagttgaaa 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2005 gaattactctctgaagaagtatctgatatggacaatttaatcaacagcgaggagttgaaa 1946
Query: 354 actcttttgagatcgttattcaaaatctacaaagatattgtgttccaacagacggtggaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 actcttttgagatcgttattcaaaatctacaaagatattgtgttccaacagacggtggaa 1886
Query: 414 ttgaataagaaaaccattaagcttatgaaggaacatcataaagcacaaatacgaactggt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 ttgaataagaaaaccattaagcttatgaaggaacatcataaagcacaaatacgaactggt 1826
Query: 474 aaggaatccagtgaatatcttgatgattttaatgagcttaatccaatttttgaaaagttc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 aaggaatccagtgaatatcttgatgattttaatgagcttaatccaatttttgaaaagttc 1766
Query: 534 tctacggttgcaacggcgctagcggaagcctttaacgtggatccaccagaacttttagat 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 tctacggttgcaacggcgctagcggaagcctttaacgtggatccaccagaacttttagat 1706
Query: 594 atagaacaaagtttaaaagagcaggagccatccataattacgcctgcatctgactggaag 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1705 atagaacaaagtttaaaagagcaggagccatccataattacgcctgcatctgactggaag 1646
Query: 654 gagaagcaagagccaatttgggagaacgaagaanacaggaggttttatgagaatctggct 713
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1645 gagaagcaagagccaatttgggagaacgaagaaaacaggaggttttatgagaatctggct 1586
Query: 714 gatttaagtgccgcctatgctacttatga-cccagaaaaaacaccaagtccagaagacgt 772
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1585 gatttaagtgccgcctatgctacttatgaccccagaaaaaacaccaagtccagaagacgt 1526
Query: 773 tatagcattatttgctgattttgagacagtngagactaaagatg-aatagatgaaatttc 831
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 1525 tatagcattatttgctgattttgagacagtagagactaaagatgaaatagatgaaatttc 1466
Query: 832 acgtcgttactggttgcaaaatcttgataac-aagcgacagaaaaga-aatcatgaagtt 889
||||||||||||||||||||||||||||||| |||||||| ||||| | ||||||||||
Sbjct: 1465 acgtcgttactggttgcaaaatcttgataacaaagcgacaagaaagagactcatgaagtt 1406
Query: 890 tttcgtggaatgtnaaga 907
||||||||||||| ||||
Sbjct: 1405 tttcgtggaatgtaaaga 1388
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6858
Number of Sequences: 1807
Number of extensions: 6858
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)