BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZG05RM1.SCF screened BAC_end
(874 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig893 630 e-180
>3x_Contig893
Length = 2804
Score = 630 bits (318), Expect = e-180
Identities = 385/401 (96%), Gaps = 5/401 (1%)
Strand = Plus / Plus
Query: 88 aagcataaagaaatatatgattacaatacccctctgcgtaatggttggcggtatcatgta 147
|||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 2063 aagcataaggaaatttatgattagaatacacctctgcgtaatggttggcggtatcatgta 2122
Query: 148 tgtatgaagggtatgtatatatgtacagctggatggatattgtgaatgaggtccctgttg 207
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2123 tgtatgaagggtatgtatatatgtacggctggatggatattgtgaatgaggtccctgttg 2182
Query: 208 caatttttctcatttcttccatggtgatttgaaagcccaattcccgatacgatttccctt 267
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2183 caatttttctcatttcttccatggtgatttgaaagcccaattcccgagacgatttccctt 2242
Query: 268 tggattggtggcatctttggtccaagtcttacctgtgcgtaattcatagttctctttttc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2243 tggattggtggcatctttggtccaagtcttacctgtgcgtaattcatagttctctttttc 2302
Query: 328 taattcgtcaaggcgtgttctgagctcttgattttcgtccataacttncagatttctttc 387
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2303 taattcgtcaaggcgtgttctgagctcttgattttcgtccataacttccagatttctttc 2362
Query: 388 cattgttctattc-aatctgctttc-aatctgggggaa-ttcagcatctggatta-gtaa 443
||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||| ||||
Sbjct: 2363 cattgttctattcaaatctgctttcaaatctgtgggaatttcagcatctggattaggtaa 2422
Query: 444 cgtttgtttataaa-tttacgttccaattggttcttcaaat 483
|||||||||||||| || |||||||| ||| ||||||||||
Sbjct: 2423 cgtttgtttataaagttcacgttccagttgtttcttcaaat 2463
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,738
Number of Sequences: 1807
Number of extensions: 20738
Number of successful extensions: 212
Number of sequences better than 1.0e-20: 1
length of query: 874
length of database: 10,358,551
effective HSP length: 16
effective length of query: 858
effective length of database: 10,329,639
effective search space: 8862830262
effective search space used: 8862830262
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)