BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZG06RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig523 846 0.0
>3x_Contig523
Length = 2310
Score = 846 bits (427), Expect = 0.0
Identities = 585/627 (93%), Gaps = 8/627 (1%)
Strand = Plus / Plus
Query: 136 aatcaacctacgcacatgcacacacgtacacactcatccagaggagaacaggtgggattc 195
||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 1198 aatcaacatacgcacatgcacacacgtacacactcatcccgaggagaagaggtgggattc 1257
Query: 196 gtgtcgtcctgggctatgagttttaaagcattcacgagagaatacaaagtagtgaacaat 255
|||||||||||||||||||||||||| | ||||| | ||||||||||||||||||| |||
Sbjct: 1258 gtgtcgtcctgggctatgagttttaaggtattca-gtgagaatacaaagtagtgaagaat 1316
Query: 256 actactaagtctctacagatatgttaaaattaatctaatttattataaaccgtaatatga 315
|||| || |||||||| | ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1317 actagtaggtctctacggttattttaaaattaatctaatttattataaaccgtaatatga 1376
Query: 316 gtgaacttttggctgaagaattggtccatgaagacggaagatcggtcgatagccgacagg 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1377 gtgaacttttggctgaagaattggtccatgaagacggaagatcggtcgatagccgacagg 1436
Query: 376 atttatgtacgccaatggcatctgatttgttgtccacatcggcatcaaatgatattaatg 435
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1437 atttaggtacgccaatggcatctgatttgttgtccacatcggcatcaaatgatattaatg 1496
Query: 436 gagacagtagcaaccagagctctgctagcgagtatgatagtgaagatgagtacgattcag 495
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1497 gagacagtagcaaccagggctctgctagcgagtatgatagtgaagaggagtacgattcag 1556
Query: 496 atgtaattgatgagtatgagagacagctttccgatgctcagcgagaatgggaacgttctt 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1557 atgtaattgatgagtatgagagacagctttccgatgctcagcgagaatgggaacgttctt 1616
Query: 556 tagatcagctatggcatgcggtgacgtggattatactaccgcttagcgggaaaacttctc 615
|||| ||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 1617 tagaacagctatggcaggcggtgacgtggattatactaccgc-tagcggggaaacttctc 1675
Query: 616 -gcag-agaaccgcaagcataatat-gaggaaagtgatgacccatttatacttcttg-at 671
|||| ||||||||| ||||||||| |||||| ||||||| |||||||||| ||||| ||
Sbjct: 1676 ggcagaagaaccgcaggcataatatggaggaaggtgatgaaccatttatac-tcttgaat 1734
Query: 672 tcaatggcattaaagatttgggcaggccatttcttttttcattca-gtgaccaatgaatg 730
|||||||||||||||| || ||||||| |||||| | ||||| || ||||| ||||||||
Sbjct: 1735 tcaatggcattaaagagtttggcaggcgatttctctcttcatccaggtgacgaatgaatg 1794
Query: 731 attttccgatcagaaaaatattttaaa 757
| || |||||| |||||| ||||||
Sbjct: 1795 aattcacgatcaagaaaataatttaaa 1821
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6900
Number of Sequences: 1807
Number of extensions: 6900
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)