BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZG08RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig819 1112 0.0
>3x_Contig819
Length = 3350
Score = 1112 bits (561), Expect = 0.0
Identities = 657/681 (96%), Gaps = 6/681 (0%)
Strand = Plus / Minus
Query: 64 aaatgtattgacttgcc-atggtaagtagcttcaactttgtgtcagttattgagctaaaa 122
|||| |||||||||| | |||| |||| | |||||||||||||| || ||||||||||||
Sbjct: 744 aaatatattgacttgtctatggcaagttgtttcaactttgtgtctgtaattgagctaaaa 685
Query: 123 gcggtatccttgttagatccctctgcctctttggcatcgaaatcaagcacttcttgaaac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcggtatccttgttagatccctctgcctctttggcatcgaaatcaagcacttcttgaaac 625
Query: 183 tgagtagatatggtattcgccatggacgaccagaatgattttttagaaacagtgttccag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgagtagatatggtattcgccatggacgaccagaatgattttttagaaacagtgttccag 565
Query: 243 tacccttgcgtcaactcttcaactttctccaagttgtcatccaatttccccaacatctct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tacccttgcgtcaactcttcaactttctccaagttgtcatccaatttccccaacatctct 505
Query: 303 tgagccttatttgtaacggtaccgcccaaattctcagggatttggaaattcaaagagtcc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgagccttatttgtaacggtaccgcccaaattctcagggatttggaaattcaaagagtcc 445
Query: 363 ttctctttaacaaaacctaaaatagcctttgaagttttctggagctgttcatccacttgg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttctctttaacaaaacctaaaatagcctttgaagttttctggagctgttcatccacttgg 385
Query: 423 tcctcgaacttctgaaacgcctcatcagtcttatcatcatgttttgtcaccttaacggca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcctcgaacttctgaaacgcctcatcagtcttatcatcatgttttgtcaccttaacggca 325
Query: 483 tctgcagtctctgttgcagtctcttcatataagaaatccatcgctaaagacgcttttcac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctgcagtctctgttgcagtctcttcatataagaaatccatcgctaaagacgcttttcac 265
Query: 543 gactaatgctaagctagctattaccaaagtacctttatgtcaccaaattacacgtcttgc 602
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||
Sbjct: 264 gactaatgctaagctagctattaccaaagtaccttaatgtcaccaaataacacgtctggc 205
Query: 603 tagatacgctcgacgcttatcgacagacttctcgcgagaactcttttgttgcggcttccc 662
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 204 tagatacgctcgacgcttatcgacagacttctcgcgagaactcttttgttgc-gcctccc 146
Query: 663 cttcttggagaataattcctttaaaggttcaacctcccaaaggtttaattgattttcctt 722
||||||| || || | |||||||||||||||| || ||||| |||| | |||||||||||
Sbjct: 145 cttcttgaag-atcaatcctttaaaggttcaaact-ccaaatgtttca-tgattttcctt 89
Query: 723 atttttggacccttttcattg 743
||| ||||| |||||||||||
Sbjct: 88 attattgga-ccttttcattg 69
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7287
Number of Sequences: 1807
Number of extensions: 7287
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)