BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZG09FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1424 1388 0.0
>3x_Contig1424
Length = 9842
Score = 1388 bits (700), Expect = 0.0
Identities = 779/800 (97%), Gaps = 5/800 (0%)
Strand = Plus / Minus
Query: 123 gatctactagaggcacggttcgatttttaacccttcctttgcagttgttgttgctgcttg 182
|||||| ||||||||||| |||||||| |||||| |||||||||||||||||| ||||||
Sbjct: 8688 gatctagtagaggcacgggtcgattttgaaccctccctttgcagttgttgttgttgcttg 8629
Query: 183 atggatttcgcatgttgcctcaacaatttgcgttcttgatacttttgcatctgttgtgat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8628 atggatttcgcatgttgcctcaacaatttgcgttcttgatacttttgcatctgttgtgat 8569
Query: 243 ctttcgaagagaatggattctctttccatttccggcaacagttctagcttttcacgatct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8568 ctttcgaagagaatggattctctttccatttccggcaacagttctagcttttcacgatct 8509
Query: 303 ttctcatccttgtatttaccttccaacggaaaggggattgagtctgtttcttcttcttct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8508 ttctcatccttgtatttaccttccaacggaaaggggattgagtctgtttcttcttcttct 8449
Query: 363 tcttcttcttcctcgtcattgtcgaaagagtccgctggcatatatccatcgtcatcctcc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8448 tcttcttcttcctcgtcattgtcgaaagagtccgctggcatatatccatcgtcatcctcc 8389
Query: 423 tcatcattgtcatcttcatcttcatcttcatcttcatcgtctttcattatacgccttctt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8388 tcatcattgtcatcttcatcttcatcttcatcttcatcgtctttcattatacgccttctt 8329
Query: 483 ttgcttccggatgactccttgctagcgtgctttttggatgttgataggaattcatcctct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8328 ttgcttccggatgactccttgctagcgtgctttttggatgttgataggaattcatcctct 8269
Query: 543 tcttcctcgtcagttccggcaccggctaaagccaataaatcatcatccaaatcagacatt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8268 tcttcctcgtcagttccggcaccggctaaagccaataaatcatcatccaaatcagacatt 8209
Query: 603 ctcaatagatattacacgagcgacgagaaattactaatacctgaatgttttaggtagtga 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8208 ctcaatagatattacacgagcgacgagaaattactaatacctgaatgttttaggtagtga 8149
Query: 663 aattcacgtatcctacaactggtgatataacttggaaggagacaatatcgaagttgttct 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8148 aattcacgtatcctacaactggtgatataacttggaaggagacaatatcgaagttgttct 8089
Query: 723 cccactgcttactattccgtntttaatccattcgtctttgagttttcattttaatttgat 782
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 8088 cccactgcttactattccgtttttaatccattcgtctttgagttttcattttaatttgat 8029
Query: 783 tgntcaatatcgataattcagtgaaagtggaagatgntcgggttatatttttgac-natg 841
|| ||||||||||||||||||||||||||||||||| |||||| ||| ||||||| |||
Sbjct: 8028 tgttcaatatcgataattcagtgaaagtggaagatgttcgggtaata-ttttgacaaatg 7970
Query: 842 tatggaaaaaaagacgaacac-acttaaaggattcgtgttaaaag-atgcacatattagc 899
||||||||||||||||||||| ||| | ||||| ||||||||| ||||||||||||||
Sbjct: 7969 tatggaaaaaaagacgaacacaactaagaggatcgttgttaaaagaatgcacatattagc 7910
Query: 900 agaagga-atgtagacatat 918
|||| || ||||||||||||
Sbjct: 7909 agaaagatatgtagacatat 7890
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,241
Number of Sequences: 1807
Number of extensions: 11241
Number of successful extensions: 860
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)