BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZG09RM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1201 0.0
>3x_Contig1803
Length = 52241
Score = 1201 bits (606), Expect = 0.0
Identities = 745/782 (95%), Gaps = 7/782 (0%)
Strand = Plus / Minus
Query: 121 ccgggatatagactgcgattccgccacaatcgtcctagcacaattctttgagcacgttat 180
|||||||| ||||||||||| |||||| | |||| ||||||||||||||||||| |||||
Sbjct: 10862 ccgggataaagactgcgatttcgccacgaacgtcatagcacaattctttgagcaggttat 10803
Query: 181 tggcccttaccgactaataaaaactacatccaagtcatctgtcatagaactggcctcgag 240
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10802 tgtcccttaccgcctaataaaaactacatccaagtcatctgtcatagaactggcctcgag 10743
Query: 241 cattgacagcactagacagtacactgttctctttctttctggtgatacatcgatatcaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10742 cattgacagcactagacagtacactgttctctttctttctggtgatacatcgatatcaga 10683
Query: 301 attcgttaataacctgcccttgaaccacgactgtatttcagtgcttccattcccaatggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10682 attcgttaataacctgcccttgaaccacgactgtatttcagtgcttccattcccaatggg 10623
Query: 361 tacaggaaatgcatgggcaagctctttgaagttgatggatccagctgtcatattctcaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10622 tacaggaaatgcatgggcaagctctttgaagttgatggatccagctgtcatattctcaca 10563
Query: 421 atttgtcaatggtaagttgtcctgcaacgatttcccgttgtatagggcaacttttgacaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10562 atttgtcaatggtaagttgtcctgcaacgatttcccgttgtatagggcaacttttgacaa 10503
Query: 481 cggttatgtccttaaattcttcataattttgtcactgggatttcatgcaaatttacttca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10502 cggttatgtccttaaattcttcataattttgtcactgggatttcatgcaaatttacttca 10443
Query: 541 tctctgcgaagaagatgagtaccagaaaatgggcattgaaagggttagagttgctagcca 600
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 10442 tctctgcgaagaagatgagtaccagaaaatgggcattgaaaggtttagagttgctagcca 10383
Query: 601 gcgaattttaagagaaatac-agctcgaatctcgcgtctctattcccgatattctggaaa 659
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 10382 gcgaattttaagag-aatacaagctcgaatctcgcgtctctattcccgatattctggaag 10324
Query: 660 gatcttttagttattttgcgttaataaataccacaaatctgtagcaaac-tatatgccat 718
||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||
Sbjct: 10323 gatcttttagttattttgcgttaataaataccacaaatctggagccaacttatatgccat 10264
Query: 719 cttccgattctgattcattggaatcacaactacatgtattggcataccagtccttctctg 778
|| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 10263 ctcccgattctgatccattggaatcacaactacatgtattggcataccagt-cttctctg 10205
Query: 779 gatagagtagaaatccagaaaaaggtttttaatgggttattcaaattacgaaccattcaa 838
|||||||||||| ||||||||| ||| ||| |||||||||||||| |||||| |||||||
Sbjct: 10204 gatagagtagaattccagaaaagggtattt-atgggttattcaaa-tacgaagcattcaa 10147
Query: 839 cattcttacaaaagggaaccgttttcaaaaccattgccatttttttttaacctcgaatta 898
||||||| || |||| |||||| | |||| ||||||||| ||||||| ||||| ||
Sbjct: 10146 acatcttacagaatggaa-cgttttacagaccactgccattttgttttaacgtcgaagta 10088
Query: 899 ct 900
||
Sbjct: 10087 ct 10086
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7277
Number of Sequences: 1807
Number of extensions: 7277
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)