BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZG10FM1.SCF screened BAC_end
         (941 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1540                                                        1289   0.0  

>3x_Contig1540 
          Length = 9505

 Score = 1289 bits (650), Expect = 0.0
 Identities = 734/754 (97%), Gaps = 6/754 (0%)
 Strand = Plus / Minus

                                                                        
Query: 88   tgtatgagccccgaatattatagagttttctgctcttctaatgttactgtaaaataggcc 147
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 tgtaggagccccgaatattatagagttttctgctcttctaatgttactgtaaaataggcc 1144

                                                                        
Query: 148  ttgcgaggtggcgattattaacttccgtccgccatcacaagatgcaacgctgttaatctt 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 ttgcgaggtggcgattattaacttccgtccgccatcacaagatgcaacgctgttaatctt 1084

                                                                        
Query: 208  attggagtatttttattacctatcactaattttgcaaacgttaaagatatcgatttcttt 267
            ||||||||| |   | |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1083 attggagtaatcaaaatacctatcactaattttgcaaacgttaaagatatcgttttcttt 1024

                                                                        
Query: 268  gataatcctagcttgttcctgctttatcttctcaagaagcgtttgcattgctgccaactg 327
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1023 gataatcctagcttgttcctgctttatcttctcaagaagcgtttgcattgctgcgaactg 964

                                                                        
Query: 328  tgctgcgtataacgttacttggtatttgtttttatcaccataatacgtgaaagagatagc 387
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 963  tgctgcgtataacgttacttggtatttgtttttagcaccataatacgtgaaagagatagc 904

                                                                        
Query: 388  atttctgggattcgtgccagcgattgcatacacgataaataaccataccttgactatccg 447
            ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 903  atttctgggattcgtgccagcgattgcat-caggataaataaccataccttgactatccg 845

                                                                        
Query: 448  gtttaccgcaaatatgtctctttaaacttggcatttcttcaccaggagcggcaaataaca 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844  gtttaccgcaaatatgtctctttaaacttggcatttcttcaccaggagcggcaaataaca 785

                                                                        
Query: 508  acgggagaggtataggccgctggaaaactttatgttgattccatttattgactgctcttg 567
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 784  acgggagaggtataggccgctggaaaactttatgttgattccatttattgactgcttttg 725

                                                                        
Query: 568  acttcaaaaataataacatattgttcagtagataaaattgaaggtcacctgtaacaccat 627
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 724  acttcaaaaataataacatattgtccagtagataaaattgaaggtcacctgtaacaccat 665

                                                                        
Query: 628  tttcattcttggtaatttcttttcttgatagaaggccttcatgcttgatcttccgtttat 687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664  tttcattcttggtaatttcttttcttgatagaaggccttcatgcttgatcttccgtttat 605

                                                                        
Query: 688  catcattcaatcccatgttgacatactcattcttgaagag-atcttttgcttcaacaatt 746
            ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 604  catcattcaatcccatgttgacatactcattcttgaaaagaatcttttgcttcaacaatt 545

                                                                        
Query: 747  taacatcatgtctgtcctgagcagcaccactagccttatcaatacgttttcataaatgca 806
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 544  taacatcatgtctgtcctgagcagcaccactagccttatcaatacg-tttcataaatgc- 487

                                              
Query: 807  acgaagggcttcttagggccactggttaaattct 840
            |||||||||||| ||||||| || ||||||||||
Sbjct: 486  acgaagggcttc-tagggcc-cttgttaaattct 455


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6607
Number of Sequences: 1807
Number of extensions: 6607
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)