BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZG10RM1.SCF screened BAC_end
         (964 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1027                                                         872   0.0  

>3x_Contig1027 
          Length = 4522

 Score =  872 bits (440), Expect = 0.0
 Identities = 498/516 (96%), Gaps = 1/516 (0%)
 Strand = Plus / Plus

                                                                        
Query: 66   gtcaacattggaacatccaggaagctctgagttctccataagtctgtttgttataccgtt 125
            |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3855 gtcaacattgtaacattcaggaagctctgagttctccataagtctgtttgttataccgtt 3914

                                                                        
Query: 126  ttccatctgtgttctgatcctttgagcatccaactcctgcaatacttttatttcattttc 185
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 3915 ttccatctgtgttctgatcctttgagcatccaactcctggaatacttttatttcattttc 3974

                                                                        
Query: 186  gtttctcgccaagatttcattgagttcgttatcatccaactgctcttcttcttcaatgcc 245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3975 gtttctcgccaagatttcattgagttcgttatcatccaactgctcttcttcttcaatgcc 4034

                                                                        
Query: 246  taactcacgtcttttcttttcctcttcctcagctcctagtaacgatctcaataatgcctc 305
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4035 taactcacgtcttttcttttcctcttcctcagcttctagtaacgatctcaataatgcctc 4094

                                                                        
Query: 306  ttgttcttcagctgctgatttgttatcaaacttacctgcttgaataactttgccgtcaat 365
            |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 4095 ttgttcttcagctgttgatttgttatcaaacttacctgcttgaataacttttccgtcaat 4154

                                                                        
Query: 366  gtccaatttggcatgcgccttatcaagaattgcttcttccactgaattgcctgtaattaa 425
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4155 gtccaatttggcatgcgccttatcaagaattgcttcttccactgaattgtctgtaattaa 4214

                                                                        
Query: 426  tctaagaatacgcacttcattcttttgaccgattctatgagctctgtcttgggcctgtag 485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 4215 tctaagaatacgcacttcattcttttgaccgattctatgagctctgtcttgggcctgtaa 4274

                                                                        
Query: 486  atcctcgtgaggatttcaatcagtattcaaaatgataacggcatctgccgtttgcaaatt 545
            ||||| ||||||||| ||||||||||  ||||||||||||| |||||| |||||||||||
Sbjct: 4275 atcctggtgaggattccaatcagtatcaaaaatgataacggtatctgcagtttgcaaatt 4334

                                                
Query: 546  taaacctaaacc-ccagcttttgtaaataaagggaa 580
            |||||||||||| |||||| ||||| ||||| ||||
Sbjct: 4335 taaacctaaaccaccagctcttgtagataaaaggaa 4370


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9047
Number of Sequences: 1807
Number of extensions: 9047
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)