BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZG12FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1384 1503 0.0
>3x_Contig1384
Length = 9372
Score = 1503 bits (758), Expect = 0.0
Identities = 827/846 (97%), Gaps = 4/846 (0%)
Strand = Plus / Plus
Query: 86 tgacttgaaaataactatcgaaaatgccaagcttgtccttctaggaatagccttcttctc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8040 tgacttgaaaataactatcgaaaatgccaagcttgtccttctaggaatagccttcttctc 8099
Query: 146 ttgcgtttccccactcgagaggcttttttattgctcgcttacgtttatccttcctgcacc 205
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 8100 ttgcgtttccccactcgagaggcatttttattgctcgcttacgtttatccttcctgcacc 8159
Query: 206 tttaaatttcga-anggatttttttcgtaatgtccaaaattgcaaccattttaaaggtaa 264
|||||||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8160 tttaaattccgatatggaattttttcgtaatgtccaaaattgcaaccattttaaaggtaa 8219
Query: 265 aaaagatcaatgaaggatgaagaatgaaaagaatcaacaactcggtctcttcattcttac 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8220 aaaagatcaatgaaggatgaagaatgaaaagaatcaacaactcggtctcttcattcttac 8279
Query: 325 tgttactatacactactcctagattctgatagtggtagcatcaatggtgaagtaccagta 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8280 tgttactatacactactcctagattctgatagtggtagcatcaatggtgaagtaccagta 8339
Query: 385 actaaagatgagggatccaacagagttacaacctgtgcattcattgccatctttacgatc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8340 actaaagatgagggatccaacagagttacaacctgtgcattcattgccatctttacgatc 8399
Query: 445 cggtactaaatcaatagcaagcgatgaggcatctgagcctaaacaattacattcagatag 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8400 cggtactaaatcaatagcaagcgatgaggcatctgagcctaaacaattacattcagatag 8459
Query: 505 caggattaactgtggtgatgtcgctgatcctgatatacagtatattggacctaatacaga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8460 caggattaactgtggtgatgtcgctgatcctgatatacagtatattggacctaatacaga 8519
Query: 565 aaaggtagagtccttgagtcagaaaatttcaaagataagcagtctccgagataagtccct 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8520 aaaggtagagtccttgagtcagaaaatttcaaagataagcagtctccgagataagtccct 8579
Query: 625 tgntgntcccagatcagaaagaagaggattgcttgcgaacctagcgataatcccggaata 684
|| || ||||| |||| ||| || || ||| ||| |||||||||||||||||||||||||
Sbjct: 8580 tgttgttcccatatcataaataatagtatttctttcgaacctagcgataatcccggaata 8639
Query: 685 taaagactctagagagtatccacgacacttgaagtcatttatcgtacttatcattgcata 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8640 taaagactctagagagtatccacgacacttgaagtcatttatcgtacttatcattgcata 8699
Query: 745 tggagctgtcatgggtcccatgggaacttctattattntccctgcaattggtcctttagt 804
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 8700 tggagctgtcatgggtcccatgggaacttctattattttccctgcaattggtcctttagt 8759
Query: 805 agcggatttcgatacatcgacgataatggtcgatgtctctgttggtatctatttattgag 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8760 agcggatttcgatacatcgacgataatggtcgatgtctctgttggtatctatttattgag 8819
Query: 865 ccttggtatatttccaatat-gtggtcatctttatccg-aatagagggca-acgtactga 921
|||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct: 8820 ccttggtatatttccaatatggtggtcatctttatccgaaatagagggcagacgtactgt 8879
Query: 922 atatgt 927
||||||
Sbjct: 8880 atatgt 8885
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5823
Number of Sequences: 1807
Number of extensions: 5823
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)