BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZG12RM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1644 1404 0.0
>3x_Contig1644
Length = 13148
Score = 1404 bits (708), Expect = 0.0
Identities = 839/876 (95%), Gaps = 5/876 (0%)
Strand = Plus / Plus
Query: 47 tcagtttgaaaatggctgtcaatgtttaatggagtgatctatactgcgaaagatgtttcc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 tcagtttgaaaatggctgtcaatgtttaatggagtgatctatactgcgaaagatgtttcc 141
Query: 107 aacattgttcgtctaggaccaattactcatatgcatacagcccgacatctcattccctcc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 aacattgttcgtctaggaccaattactcatatgcatacagcccgacatctcattccctcc 201
Query: 167 ttatccatctagtaaacgttcaatagatgatatatacagaaacttgcgccgtatagtttt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttatccatctagtaaacgttcaatagatgatatatacagaaacttgcgccgtatagtttt 261
Query: 227 ctctttctctcttgttgacataggttcgccaatctaacaaccgtggagttctacagtaat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctctttctctcttgttgacataggttcgccaatctaacaaccgtggagttctacagtaat 321
Query: 287 ttcgggactgtctaatttctgaaacacccagacattgttgaagagggatggctttcatta 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttcgggactgtctaatttctgaaacacccagacattgttgaagagggatggctttcatta 381
Query: 347 cttttcgaatttcatttatgttaagaatttcctaatttgtcaagatagaatgtggaaaat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cttttcgaatttcatttatgttaagaatttcctaatttgtcaagatagaatgtggaaaat 441
Query: 407 gaatggcagacacatttttgccagatcgtatgtttcaatatccaaaggtcagcttcaatt 466
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 442 gaatggcagacacatttttgccagatcgtaggtttcaatatccaaaggtcagcttcaatt 501
Query: 467 tttcatagtaacaaattgtcaatgattttaatgaatttatcatttattacatggataagc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 502 tttcatagtaacaaattgtcaatgattttaatgaatttatcatttattacatgtataagc 561
Query: 527 ttggatatatcaacattaactttattattgtttaagcttagacctcagagaccagaaaaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttggatatatcaacattaactttattattgtttaagcttagacctcagagaccagaaaaa 621
Query: 587 catatcaagaatggctaacggtacgtgcgaggggtggtatcccgtttaaaaccctttagt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 catatcaagaatggctaacggtacgtgcgaggggtggtatcccgtttaaaaccctttagt 681
Query: 647 tgttcttcaagaaaggatggataaaaaccattggaaaaagtatggattactctgattaga 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 682 tgttcttcaagaaaggatggataaaaaccattggaaaaagtatggattactctgataagt 741
Query: 707 gtattcgtgtgtgattttgcggagtcgggtcgatgttagatatctgtaagggaatgtaaa 766
||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| ||| ||
Sbjct: 742 gtattcgtgtgtgattttgcggagtcgtgtcgatgttagttatctgtaatggattgt-aa 800
Query: 767 cgtaaacacttttttc-atttaaatagtgctatctcaaacagtatttttagtggtgatgc 825
||| |||||||| ||| || | |||||||||||||||||||||| |||||||| ||||||
Sbjct: 801 cgttaacactttcttcaatctcaatagtgctatctcaaacagta-ttttagtgatgatgc 859
Query: 826 cacgaccagtaaggaggaattccccagtttggttagtggtttaaccacacaatttcaggg 885
||||| || ||||||||| | |||| ||| ||| |||| |||||| ||| |||||
Sbjct: 860 aacgacaag-aaggaggaagtacccaagttgagtaggtgtttcaccacagaatctcaggt 918
Query: 886 atgtttgcttaacggccaaagcaggatgcttacgtt 921
|| ||| ||| || | |||||||||| |||||||||
Sbjct: 919 atttttcctt-acagtcaaagcaggaagcttacgtt 953
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7699
Number of Sequences: 1807
Number of extensions: 7699
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)