BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZH01FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1056 1586 0.0
>3x_Contig1056
Length = 3113
Score = 1586 bits (800), Expect = 0.0
Identities = 837/847 (98%), Gaps = 2/847 (0%)
Strand = Plus / Minus
Query: 89 cttgcattccgaacttgtgaaaatcggggagtcaaatgctaaaagctcaaagattattaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 cttgcattccgaacttgtgaaaatcggggagtcaaatgctaaaagctcaaagattattaa 1230
Query: 149 cgggaaagatttcgagaaagattggaggccgctttattttgtatctaaaaggatgggaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 cgggaaagatttcgagaaagattggaggccgctttattttgtatctaaaaggatgggaca 1170
Query: 209 gaatcaggcctttttgaacgccgtcaacgcatgtttagatgacatgacttgcccagtttg 268
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 gaatcaggccaccttgaacgccgtcaacgcatgtttagatgacatgacttgcccagtttg 1110
Query: 269 tatggaacaaatggatattgactcaatgttagttttgaattcctgtggtcattgcttatg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 tatggaacaaatggatattgactcaatgttagttttgaattcctgtggtcattgcttatg 1050
Query: 329 cgcacaatgttttgaaccgtatgttgataacgcaaaattggagcccaccgcgtccttcgg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 cgcacaatgttttgaaccgtatgttgataacgcaaaattggagcccaccgcgtccttcgg 990
Query: 389 accgaaaggtactaattctgtcaatattccatgtcttgtatgcaggaaaatgaacaatga 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 accgaaaggtactaattctgtcaatattccatgtcttgtatgcaggaaaatgaacaatga 930
Query: 449 caaagaagcaatcagttatcaactatttgatcaagttaataacctcaactattctattga 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 caaagaagcaatcagttatcaactatttgatcaagttaataacctcaactattctattga 870
Query: 509 tgatttgaggctagaatatgacaagatggtagctgaacaaaaggctaggttaaaaaatgg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tgatttgaggctagaatatgacaagatggtagctgaacaaaaggctaggttaaaaaatgg 810
Query: 569 ttacacaatagattataaaagccttaaagaatctaagaaggttgaaatgtgtcttgacat 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ttacacaatagattataaaagccttaaagaatctaagaaggttgaaatgtgtcttgacat 750
Query: 629 tatcaagaaagtcacagattctaacactgatgaaaagctagtcatattttcgcaattcac 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tatcaagaaagtcacagattctaacactgatgaaaagctagtcatattttcgcaattcac 690
Query: 689 tatgttctttgaaattttaggacattttatcaagaagaatctcggtctgaatttcttgag 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tatgttctttgaaattttaggacattttatcaagaagaatctcggtctgaatttcttgag 630
Query: 749 atatgacgggagtatgtcatccagtcaaagatctgcttgtatcgagagtttttaccggna 808
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 629 atatgacgggagtatgtcatccagtcaaagatctgcttgtatcgagagtttttaccagga 570
Query: 809 taataattatagagtgatgcttatttctatgaaagcaggtaattcgggggcttactctca 868
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 569 taataattatagagtgatgctaatttctatgaaagcaggtaattc-ggggcttactctca 511
Query: 869 catgtgccaaccatgtcatcctagcaggtcccgttttggaatccgtttgttgaagaacaa 928
||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 510 catgtgcaaaccatgtcatcctagcagat-ccgttttggaatccgtttgttgaagaacaa 452
Query: 929 gcgatgg 935
|||||||
Sbjct: 451 gcgatgg 445
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6427
Number of Sequences: 1807
Number of extensions: 6427
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)