BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZH01RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1548 577 e-164
>3x_Contig1548
Length = 9830
Score = 577 bits (291), Expect = e-164
Identities = 334/343 (97%), Gaps = 4/343 (1%)
Strand = Plus / Plus
Query: 361 tcagtgcagtatggaataaagtctttgtagttggatacttcagagacaacttcataaacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tcagtgcagtatggaataaagtctttgtagttggatacttcagagacaacttcataaacc 63
Query: 421 tcatttggagtgccgcgaatgttcctttttaacacatagtgttgttcatctttggacgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 tcatttggagtgccgcgaatgttcctttttaacacatagtgttgttcatctttggacgat 123
Query: 481 gcttcggttgtcaagttaaaaaatgaccttttttcgagggcagaagcttgtgggcagggt 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 124 gcttcggttgtcaagttaaaaaatgacctttttccgagggcagaagcttgtgggcagggt 183
Query: 541 gtaagcttag-aaaagacagaatcatagcaattttgccagtacctactgtcaacatcttc 599
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gtaagcttagaaaaagacagaatcatagcaattttgccagtacctactgtcaacatcttc 243
Query: 600 gaatgagggctctatcaaaatatatgcctttgtttat-aactcatctgtccaac-tttgg 657
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 244 gaatgagggctctatcaaaatatatgcctttgtttataaactcatctgtccaacttttgg 303
Query: 658 cattatt-tgggtattgaaactgaaactcttttcattatgaaa 699
||||||| ||| ||| |||||||||||||||||| |||||||
Sbjct: 304 cattattctggttatgtaaactgaaactcttttcaatatgaaa 346
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6359
Number of Sequences: 1807
Number of extensions: 6359
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)