BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZH02RM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1115 1588 0.0
>3x_Contig1115
Length = 4702
Score = 1588 bits (801), Expect = 0.0
Identities = 830/838 (99%), Gaps = 2/838 (0%)
Strand = Plus / Plus
Query: 55 caacaaatggactggcaaagtatggaaactttaatagcaaacgagcagcggaaaggcaac 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2917 caacaaatggactggcaaagtatggaaactttaatagcaaacgagcagcggaaaggcaac 2976
Query: 115 aagattgctcggatcattaagctgccaatggatttaccaaataataaaattaccattgaa 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2977 aagattgctcggatcattaagctgccaatggatttaccaaataataaaattaccattgaa 3036
Query: 175 ttaccaaaagatgggtacagcgaggatgattctactgaacatcatcagtcagaagctgat 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3037 ttaccaaaagatgggtacagcgaggatgattctactgaacatcatcagtcagaagctgat 3096
Query: 235 tattcatcaaacgaaagtgatgttaaccaatcagattcctctgtctcatcggattattct 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3097 tattcatcaaacgaaagtgatgttaaccaatcagattcctctgtctcatcggattattct 3156
Query: 295 gattctgattttgaagaactaacttcatccaaaagtaaacagcaaagtagaagaaaatcc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3157 gattctgattttgaagaactaacttcatccaaaagtaaacagcaaagtagaagaaaatcc 3216
Query: 355 aagataacatcagagaaacgggaaactgttctgctgacagtcgatttatctttatcggca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3217 aagataacatcagagaaacgggaaactgttctgctgacagtcgatttatctttatcggca 3276
Query: 415 tttgcaaacgcctccagttatttcaacgccaaaaaggcgacatcagagaaacaaaaaaaa 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3277 tttgcaaacgcctccagttatttcaacgccaaaaaggcgacatcagagaaacaaaaaaaa 3336
Query: 475 gttgagaagaatgctgaaaaggctttaaaaagtatccagcaaaagatcgaaaaagatcta 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3337 gttgagaagaatgctgaaaaggctttaaaaagtatccagcaaaagatcgaaaaagatcta 3396
Query: 535 caaaagaagtcaaaggaatctcatgatatcttgaaagcaattagaactccatattttttc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3397 caaaagaagtcaaaggaatctcatgatatcttgaaagcaattagaactccatattttttc 3456
Query: 595 gaaaaatattactggtttatttctagcgaaagttttctcgtactgatgggtaagagtccc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3457 gaaaaatattactggtttatttctagcgaaagttttctcgtactgatgggtaagagtccc 3516
Query: 655 gtcgaaactgatcaactttatgcanagtatgttaatgacgatgacattatggtcaccaat 714
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3517 gtcgaaactgatcaactttatgcaaagtatgttaatgacgatgacattatggtcaccaat 3576
Query: 715 gcatttgacgtgaatgcttggattttg-accctcagaagactgaagtaccaccaaacaca 773
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3577 gcatttgacgtgaaggcttggattttgaaccctcagaagactgaagtaccaccaaacaca 3636
Query: 774 ctaatgcaagctggtacttttgcaaattctgcaagtgatgcatggtcaaaaaagattgca 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3637 ctaatgcaagctggtacttttgcaaattctgcaagtgatgcatggtcaaaaaagattgca 3696
Query: 834 tnctctncttggtgggtgtttcgctataaatgttacgaaatttgacgacattgatggc 891
| |||| |||||| |||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 3697 tcctctccttggt-ggtgtttcgctaaaaatgtaacgaaatttgacgacattgatggc 3753
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7687
Number of Sequences: 1807
Number of extensions: 7687
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)