BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZH03FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1649 1574 0.0
3x_Contig1769 153 7e-37
3x_Contig325 153 7e-37
>3x_Contig1649
Length = 14442
Score = 1574 bits (794), Expect = 0.0
Identities = 828/837 (98%), Gaps = 2/837 (0%)
Strand = Plus / Minus
Query: 87 catgcaagtgcttgagatggaattaaaagaacgtaacatgtcacgcagatcttagtgagc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2032 catgcaagtgcttgagatggaattaaaagaacgtaacatgtcacgcagatcttagtgagc 1973
Query: 147 ttgtgacatggaactgccgttgctagataaattgaaagttagggatttggttgataagag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1972 ttgtgacatggaactgccgttgctagataaattgaaagttagggatttggttgataagag 1913
Query: 207 attttcgcattttttctaaacggtctcacttctgtctggagataatgaggaagataacga 266
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1912 attttcgcatcttttcgaaacggtctcacttctgtctggagataatgaggaagataacga 1853
Query: 267 agaccaactacgacttaaaaacagcataaagaatctaagggaacatcttacggaaaagga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1852 agaccaactacgacttaaaaacagcataaagaatctaagggaacatcttacggaaaagga 1793
Query: 327 agaggaaataaggcaactacatgatgttattagtgtaaaaaatcgagatgctgagcgttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1792 agaggaaataaggcaactacatgatgttattagtgtaaaaaatcgagatgctgagcgttt 1733
Query: 387 gaatgacgaattgatcagcatcaacatagaaaacaatcttttacaggaaaggttgacaca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1732 gaatgacgaattgatcagcatcaacatagaaaacaatcttttacaggaaaggttgacaca 1673
Query: 447 cattcaagcagaatatgacaccttgattgaacgatggttactaaaagcacaaagagaggc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1672 cattcaagcagaatatgacaccttgattgaacgatggttactaaaagcacaaagagaggc 1613
Query: 507 cgatatcatgaatacgagacttaaatagatatgacatactctatatgcctcaagttataa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1612 cgatatcatgaatacgagacttaaatagatatgacatactctatatgcctcaagttataa 1553
Query: 567 atgagttgcgagttttataagtgatttgaagttaattccctgcgactcaatggtacatca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1552 atgagttgcgagttttataagtgatttgaagttaattccctgcgactcaatggtacatca 1493
Query: 627 aatcccaagtgcatgaaactctttaaaaattcagttttccaagaaatttgcttcagtagc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1492 aatcccaagtgcatgaaactctttaaaaattcagttttccaagaaatttgcttcagtagc 1433
Query: 687 tcagtcggaagagcgtcagtctcataatctgaaggtcgagagttcgaacctcccctggag 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1432 tcagtcggaagagcgtcagtctcataatctgaaggtcgagagttcgaacctcccctggag 1373
Query: 747 catttcaatttaccaaaatttttttagctttcggatcttttcgtttactatcacgaagcc 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 catttcaatttaccaaaatttttttagctttcggatcttttcgtttactatcacgaagcc 1313
Query: 807 tgnaataataatgttttcatgttgcaactaaagtagatgtttaatgctacattatagagg 866
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1312 tgaagtaataatgttttcatgttgcaactaaagtagatgtttaatgctacattatagagg 1253
Query: 867 ctaattcgatgcaatgattcaattta-aatctgctcctgcaataattttatgtacaa 922
|||||||||||||||||||||||||| |||||||| ||||||| |||| |||||||
Sbjct: 1252 ctaattcgatgcaatgattcaatttagaatctgct-ctgcaattatttagtgtacaa 1197
>3x_Contig1769
Length = 25795
Score = 153 bits (77), Expect = 7e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 674 ttgcttcagtagctcagtcggaagagcgtcagtctcataatctgaaggtcgagagttcga 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24527 ttgcttcagtagctcagtcggaagagcgtcagtctcataatctgaaggtcgagagttcga 24586
Query: 734 acctcccctggagcatt 750
|||||||||||||||||
Sbjct: 24587 acctcccctggagcatt 24603
>3x_Contig325
Length = 1887
Score = 153 bits (77), Expect = 7e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 674 ttgcttcagtagctcagtcggaagagcgtcagtctcataatctgaaggtcgagagttcga 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1116 ttgcttcagtagctcagtcggaagagcgtcagtctcataatctgaaggtcgagagttcga 1175
Query: 734 acctcccctggagcatt 750
|||||||||||||||||
Sbjct: 1176 acctcccctggagcatt 1192
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6398
Number of Sequences: 1807
Number of extensions: 6398
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 3
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)