BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZH03RM1.SCF screened BAC_end
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig324 767 0.0
>3x_Contig324
Length = 1753
Score = 767 bits (387), Expect = 0.0
Identities = 396/399 (99%)
Strand = Plus / Plus
Query: 44 cttccttactctattcaattgattccaaatcttcatatctcgttgaccaacttttttgtg 103
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1355 cttccttactctattcaattgatcacaaatcttcatatctcgttgaccaacttttttgtg 1414
Query: 104 gttcaaattgctcaacttgaaaaaacttatgaatcccgccttgaaacctgttgcattatt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1415 gttcaaattgctcaacttgaaaaaacttatgaatcccgccttgaaacctgttgcattatt 1474
Query: 164 ttgcagatgcttggtttttctcgttacaaaaactcttctattgatctattccaatcaact 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1475 ttgcagatgcttggtttttctcgttacaaaaactcttctattgatctattccaagcaact 1534
Query: 224 actgattcgggctcgactatatctccacatttaccgtcgttcatagaatcggctctgata 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1535 actgattcgggctcgactatatctccacatttaccgtcgttcatagaatcggctctgata 1594
Query: 284 aattccattctgtcgccggaatctcggaagtttgaaatttcatggaaaaatgctagcgaa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1595 aattccattctgtcgccggaatctcggaagtttgaaatttcatggaaaaatgctagcgaa 1654
Query: 344 aagcttggtaatacaacttccttaaaaagtgtttacaatatcttggactgtgtggatgca 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1655 aagcttggtaatacaacttccttaaaaagtgtttacaatatcttggactgtgtggatgca 1714
Query: 404 agtatcaaaaaatttattgaatttgatggaattgctcct 442
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1715 agtatcaaaaaatttattgaatttgatggaattgctcct 1753
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9830
Number of Sequences: 1807
Number of extensions: 9830
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)