BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZH04RM1.SCF screened BAC_end
         (972 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1500                                                         963   0.0  

>3x_Contig1500 
          Length = 9720

 Score =  963 bits (486), Expect = 0.0
 Identities = 547/558 (98%), Gaps = 7/558 (1%)
 Strand = Plus / Plus

                                                                        
Query: 43   ctttgattcaacttctaaacggtcaaaccgatatatgtctgtaatatactatatatacat 102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8301 ctttgattcaacttctaaacggtcaaaccgatatatgtctgtaatatactatatatacat 8360

                                                                        
Query: 103  aatcagactttaat-atacacaaagcgaaagataaatcacgtgagtaatatatcggtcca 161
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8361 aatcagactttaatcatacacaaagcgaaagataaatcacgtgagtaatatatcggtcca 8420

                                                                        
Query: 162  ttgcctaggttccctcccttcctcgtttaaaaaacgtaatgctgccaatcgtataacgtc 221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8421 ttgcctaggttccctcccttcctcgtttaaaaaacgtaatgctgccaatcgtataacgtc 8480

                                                                        
Query: 222  gtttacgggatttcgcctcgagggaacgaaaagaatgaaaagcataataccgaagcgaat 281
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 8481 gtttacgggatttcgcctcgagggaacgaaaagaatgaaaagcataatac-gaagcgaat 8539

                                                                        
Query: 282  aaaaaaaaacagttagagaaaccccagaaactgccgtaccagaaaggaaactgggtggtg 341
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8540 aaaaaaaaacagttag-gaaaccccagaaactgccgtaccagaaaggaaactgggtggtg 8598

                                                                        
Query: 342  ctgaaatgtgcatcaaagcccaactggcgacagaaaaacaggccacaacttgcgaaaagt 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8599 ctgaaatgtgcatcaaagcccaactggcgacagaaaaacaggccacaacttgcgaaaagt 8658

                                                                        
Query: 402  acgccgtaaacactctagaagaaaagagctagtcgtatagactagctgtgataacggtat 461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8659 acgccgtaaacactctagaagaaaagagctagtcgtatagactagctgtgataacggtat 8718

                                                                        
Query: 462  gaacggcttggtttcgcaagccaatgcttattgaagaaa-ggaccgatgatgctcgatac 520
            ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 8719 gaacggcttggtttcgcaagccaatgcttattgaagaaatggaccgatgaggctcgatac 8778

                                                                        
Query: 521  tcttcgcattctatcgttaaaactcggggttttttattggttcaatttggttaccttcgg 580
            ||||||||||||||||||||||||| |||||||||| | |||||||||||||| |||| |
Sbjct: 8779 tcttcgcattctatcgttaaaactc-gggtttttta-tcgttcaatttggttaacttc-g 8835

                              
Query: 581  ggaaaaaaaagttaaaaa 598
             |||||||||||||||||
Sbjct: 8836 tgaaaaaaaagttaaaaa 8853


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8506
Number of Sequences: 1807
Number of extensions: 8506
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)