BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZH05FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1592 1104 0.0
>3x_Contig1592
Length = 12307
Score = 1104 bits (557), Expect = 0.0
Identities = 615/628 (97%), Gaps = 5/628 (0%)
Strand = Plus / Minus
Query: 277 acctaaatatcgatggtctatgtcgggagctacggacaaaggctaaatgttcggaaaaag 336
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2944 acctagatatcgatggtctatgtttggagctacggacaaaggctaaatgttcggaaaaag 2885
Query: 337 gtgtccctgtcaatgcggaggatgttcaaaaggctttgatttcgcatatgcaatgaataa 396
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2884 gtgtcgttgtcaatgcggaggatgttcaaaaggctttgatttcgcatatgcaatgaataa 2825
Query: 397 tcatttcacttggtttcgcaccacaatactgttacgttcaaattaacggtttcaattctt 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2824 tcatttcacttggtttcgcaccacaatactgttacgttcaaattaacggtttcaattctt 2765
Query: 457 ttaacgagtttccgatgtctttctttttgaagtagaggacatatctttttcgaatggata 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2764 ttaacgagtttccgatgtctttctttttgaagtagaggacatatctttttcgaatggata 2705
Query: 517 attacgaactcctcattcctgaagaaacttaaattacatggatcacgaatacaaagacaa 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2704 attacgaactcctcattcctgaagaaacttaaattacatggatcacgaatacaaagacaa 2645
Query: 577 aataaccaaattttcagtcttaaaagacttaataaaactttcagaattatccctcttata 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2644 aataaccaaattttcagtcttaaaagacttaataaaactttcagaattatccctcttata 2585
Query: 637 ttgagcatgttcgaacttttttcttttgtctcccttttatcatcgatcaataaaacgctt 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2584 ttgagcatgttcgaacttttttcttttgtctcccttttatcatcgatcaataaaacgctt 2525
Query: 697 attctactttggttntttccttttactataatgtttttcaaccaattttcactttcaaa- 755
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2524 attctactttggttttttccttttactataatgtttttcaaccaattttcactttcaaat 2465
Query: 756 ttttttacactaccttttcttgtat-aatccatcctcccacgtaatctaattaatcaact 814
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2464 ttttttacactaccttttcttgtataaatccatcctcccacgtaatctaattaatcaac- 2406
Query: 815 ttataat-acacaccgtccatttgaattggtgcgaaattcaataaattatctttatcaga 873
||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 2405 ttataataacacaccgtccatctgaattgttgcgaaattcaataaattatctttatcaga 2346
Query: 874 ttaa-tatagtctgattggtctgttatt 900
|||| |||||||||||||||||||||||
Sbjct: 2345 ttaattatagtctgattggtctgttatt 2318
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7226
Number of Sequences: 1807
Number of extensions: 7226
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)